Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1507 ATGGGTCGTCGCAAAATTGCGATTGCAAGGGTGAGAGACCCTGTCATAAGGCAGGTTACATTCTCTAAGCGCCGAACAGGATTATTCAAGAAAGCAAATGAACTTGCCATCTTGTGCGGAGCAGAAATTGCTATTGTTGTGTTCTCCCCTGGGAATAAGCCTTACTCTTTCGGGCACCCAAGTGTTGATGATGTCGCATCCAAATTTCTTGAAGAAGAGCTCAATCTAGATGATGGCATCGGAAGCTCATCTTCTGAAGTTTCAAACAGAGAGGATCTGAATCAACAACTTGACGACGTGCTAGCTGAACTAAAGGAGGCTGAAAATGAAGCTAGGGCACATGATGAGATCCTTGAAGAATACAAAGCAACTGAACTCACTCAACTTGAGGAATTGAAAGATTCATATGGGAAATTTAAGGAAATGGTGAAATCACGTCTTAGTGATTTAGAAACAACTGAATCTATGTTACTTCTTGCAGAGAAACCGGTGGTTGGAACAAAAAACAAAGTCGCAAGAAAGAAAGGAAAACAACCAATGCTTTAG 546 0.4158 MGRRKIAIARVRDPVIRQVTFSKRRTGLFKKANELAILCGAEIAIVVFSPGNKPYSFGHPSVDDVASKFLEEELNLDDGIGSSSSEVSNREDLNQQLDDVLAELKEAENEARAHDEILEEYKATELTQLEELKDSYGKFKEMVKSRLSDLETTESMLLLAEKPVVGTKNKVARKKGKQPML* 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1507 181 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 2 171 - -
Mtr8g1507 181 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mtr8g1507 181 PANTHER MADS BOX PROTEIN 2 171 - -
Mtr8g1507 181 SUPERFAMILY SRF-like 1 71 IPR036879 GO:0003677|GO:0046983
Mtr8g1507 181 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mtr8g1507 181 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mtr8g1507 181 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mtr8g1507 181 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Mtr8g1507 181 Gene3D - 16 78 IPR036879 GO:0003677|GO:0046983
Mtr8g1507 181 Coils Coil 87 124 - -
Mtr8g1507 181 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1507 Mtr-Chr8 19882014 19882559 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1507 1 162 Type I MADS-box Gene Family AT2G34440 40.805 2.75e-33 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mtr8g1507 SRF-TF 7.6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1507 - - mtr:MTR_1g054265 192.2