Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1502 ATGCTTCCTGAAAATGTTACAGTATTTAATGGGAAATATTCCAGTATTGGAGGCTACTCTCTTGATGGTTGTCGTGAGTTTTTACCTGCTGGAGCCGAAGGTGCCACCAATTTTTTTAAATGTACTGCTTGTAAATGTCACAAAAACTTCCATTGTATTGTACCTGCAACTAATCTTGTCGTTCCTTCAAAGAATGGGATCCACATTTCATGGGAGGAGCTTGAAGAAAATGTTCATGTTAGAAATGTTGAGCCCATCAATGATGATGGTCGTGATGGTGCTAGACAAGGGACGTCTAACTCGAATAAGTGGTTTAGGACAAAGTTCACCCATGAGCAAAGGAAGAAGATGTTGGATTTTGCAATGACATTAGGTTGGAAGACTAAAAAGAATGATGAGAATGTTGTTGAGGAATTTTGA 420 0.3881 MLPENVTVFNGKYSSIGGYSLDGCREFLPAGAEGATNFFKCTACKCHKNFHCIVPATNLVVPSKNGIHISWEELEENVHVRNVEPINDDGRDGARQGTSNSNKWFRTKFTHEQRKKMLDFAMTLGWKTKKNDENVVEEF* 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1502 139 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 13 139 - -
Mtr8g1502 139 SUPERFAMILY Homeodomain-like 93 139 IPR009057 -
Mtr8g1502 139 Pfam ZF-HD protein dimerisation region 15 51 IPR006456 -
Mtr8g1502 139 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 13 139 - -
Mtr8g1502 139 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 5 54 IPR006456 -
Mtr8g1502 139 Gene3D - 88 139 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1502 Mtr-Chr8 19766875 19767294 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1502 16 139 ZF-HD Transcription Factor Family AT4G24660 36.765 1.85e-21 84.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Mtr8g1502 ZF-HD_dimer 4e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1502 - - mtr:MTR_8g442330 299.286