Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1479 ATGAATCGTAGTTTGAGGCATGCGGGAGGATTCATGATACCGTGTTCCAACATAGACAATGTTCTTGTCCTTGATGATTCCTTTCTCACAAATAGCTTGTTGTCTTCTTCATCAAGAACAAGACTTGTGAATCATCGTCCAAATGTTTCTGCTGCTTCTTTGAATCATATTAATGGAGGAGGCATGATGCTAGATGATCATATTCTTCTATTTGATCATTCTTCTCTCGGCAGAAACAATATGGGTCACCACTTTCCTTTTGAATTGAGTCACGCTACTCATCAAAATTCTACTCGACAACATCATGAAACAACAACAACATGGTCTTCTGAAGCAGAATCAATGTGCTGTATTTGTCTCAATGAGTTGTCCAATGGTTCGAGCGTAGTTCAGATGCCACAACACTGCTGCTCACATGTGTTTCACAAAGATTGTATTCGGAAGTGGATTGGTGTTCGAAGCACATGCCCTTTGTGTCGAAGGAATGTGTACTGA 495 0.404 MNRSLRHAGGFMIPCSNIDNVLVLDDSFLTNSLLSSSSRTRLVNHRPNVSAASLNHINGGGMMLDDHILLFDHSSLGRNNMGHHFPFELSHATHQNSTRQHHETTTTWSSEAESMCCICLNELSNGSSVVQMPQHCCSHVFHKDCIRKWIGVRSTCPLCRRNVY* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1479 164 Pfam Ring finger domain 115 160 IPR001841 -
Mtr8g1479 164 SUPERFAMILY RING/U-box 104 163 - -
Mtr8g1479 164 SMART ring_2 116 159 IPR001841 -
Mtr8g1479 164 PANTHER GB|AAF27103.1 14 163 - -
Mtr8g1479 164 PANTHER TARGET OF ERK KINASE MPK-1 14 163 - -
Mtr8g1479 164 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 81 164 IPR013083 -
Mtr8g1479 164 ProSiteProfiles Zinc finger RING-type profile. 116 160 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1479 Mtr-Chr8 19120968 19121462 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1479 110 163 C3H Transcription Factor Family AT1G80400 44.444 2.63e-11 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1479 - K19039 pvu:PHAVU_007G098000g 75.485