Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1472 ATGACATCTCAACTTCAAATGGAAGCAAATGCTATATTAAATAGTGGATGGTGGAACACTTCTGATGCAAACTTCAATATCTCTAATCGTTGTAATTGGCATGGTATATCTTGCAACGATGCTGGAAGCATAATAGCAATCAACATAAATTACTCTTTGGGGAATGAACTTGCAACACTTAACTTGTCTACTTTCCACAATTTAGAAAGTCTTGTTATAAGGCCATTTAATCTATATGGGACTATCCCAAAAGAAATTGGTCATCTCTCCAAGCTCACTCATCTTGATTTGTCTAACAATCTTCTTATAGGTCTGGTACCTCCTTCACTAGGAAATCTCTCCAAGCTCACTCATCTTGACATCTCTTACAATAAACTTGTAGGTCAGGTACCTCATTCACTAGGAAACCTCTCCAAACTCACTCATCTTGATTTGTCTAACAATCTTCTTGCAGGTCAGGTACCTCCTTCACTAGGAAATCTCTCCAAGCTCACTCATCTTGACATCTCTTACAATAATCTTGTAGGTCAGGTACCTCATTCACTAGGAAACCCCTCCAAACTCACTCATCTTGATTTGTCTGCCAATATTCTTAAAGGTCAGGTACCTCATTCACTAGGAAATCTCTCCAAACTCACTCATCTTGATTTGTCTGCCAATATTCTTAAAGGTCAGCTACCTCCTTCACTAGGAAATCTCTCCAAACTCACTCATCTTGATTTGTCTGCCAATATTCTTAAAGGTCAGCTACCTCCTTCACTAGCAAATCTCTCCAAACTCACTCATCTTGATTTGTCTGCCAATATTCTTAAAGGTCAGGTACCTCATTCACTAGGAAATCTCTCCAAACTCACTCATCTTGATTTGTCTGCCAATATTCTTAAAGGTCAGCTACCTCCTTCACTAGGAAATCTCTCCAAACTCACTCATCTTGATTTGTCTGCCAATTTTCTTCAAGGTCATCTACCTCCTTCACTAGGAAATCTCTCCAAGCTCACTCATCTTGATTTGTCTGCCAATATTCTTAAAGGTCAGGTACCTCATTCACTAGGAAATCTCTCCAAACTCACTCATCTTGATTTGTCTGCCAATATTCTTAAAGGTCAGCTACCTCCTTCACTAGGAAATCTCTCCAAACTCACTCATCTTGATTTGTCTGCCAATTTTCTTCAAGGTCATCTACCTCCTTCACTAGGAAATCTCTCCAAGCTCACTCATCTTGATTTGTCTGTCAATTTTCTTGATGGTCAGGTACCTCCTTCACTAGGAAACCTCTCCAAACTCACTCATCTTAATTTGTCTGTCAATTTTCTTAAAGGTCAGCTACCTCCTTCACTAGGAAACCTCTCCAAACTCACTCATCTTGTTATTTATGGCAATTCTCTTGTAGGTAAGATACCTCCTTCAATAGGAAATCTTAGATCTTTAGAGTCCCTAGAGATTTCTAACAACAACATTCAAGGTTTCCTTCCTTTTGAGTTGGGGTTACTGAAAAATCTCACTACATTAGATCTGTCTCACAATAGACTCAATGGAAACCTGCCTATTTCTCTTAAAAATCTCACACAATTAATATACCTTAACTGCTCATATAATTTTTTCACTGGTTTCCTTCCATATAACTTTGATCAATTAACCAAATTGCAAGTTTTGTTGTTAAGTAGAAATTCCATTGGTGGGATCTTTCCAATTTCATTAAAAACCCTTGACATTTCCCACAATTTACTCATCGGTACGCTTCCTTCCAATTTGTTTCCATTTATTGATTATGAAACTTCCATGGACCTCAGTCACAACCACATTAGTGGTGAAATACCTTCTGAGCTTGGATATTTTCAACAACTTACTTTAAGAAATAATAATCTCACTGGAACAATTCCCCAATCTCTCTGTAAAGTCATTTATGTGGACATTTCATACAATTGTTTGAAGGGTCCCATTCCAAATTGTCTTCATACAACGAAGATCGAAAATTCTGATGTATGTTCATTTAACCAGTTCCAACCTTGGTCACCACACAAGAAAAATAATAAATTAAAGCACATTGTTGTCATTGTTATTCCGATACTTATTATTCTAGTCATAGTCTTCTTACTTCTCATATGTTTAAATCTTCATCATAATTCTTCTAAGAAGTTGCATGGAAACTCAACAAAAACAAAGAATGGAGATATGTTTTGTATATGGAATTATGATGGAATGATAGCATATGATGACATAATCAAAGCGACAGAAGACTTTGACATGAGATATTGTATTGGAACAGGAGCATATGGAAGTGTTTACAAGGCACAATTACCAAGTGGCAAGGTTGTTGCCTTAAAGAAACTTCACGGCTATGAAGCAGAGGTTCCATCTTTTGATGAGAGTTTCAGAAATGAAGTGAGAATTTTAACAGAAATAAAGCACAAACATATCGTGAAGCTTTATGGTTTCTGCTTGCACAAAAGAATCATGTTTTTGATCTATCAATACATGGATAGAGGAAGCTTATTCTCTGTCTTGTATGATGATGTAGAAGCCCTGCAATTCAAGTGGAGAAAAAGAGTTAACACTATTAAAGGAGTTGCATTTGCTCTTTCATATCTTCATCATGATTGCACTGCTCCAATAGTGCATCGAGATGTATCTACTAGCAATATCTTGCTAAACTCTGAGTGGCAGGCCAGTGTTTGTGACTTCGGCACAGCTCGACTCCTTCAATATGATTCATCCAATCGAACTATAGTTGCTGGAACTATTGGATATATAGCTCCGGAACTTGCCTATACTATGGCTGTGAATGAAAAGTGTGATGTATATAGTTTTGGTGTAGTGGCACTTGAAACTTTAGCTGGAAGGCACCCTGGGGATTTATTGTCATCACTTCAATCAACATCAACACAAAGTGTCAAACTATATCAAGTATTAGACCAGCGTCTTCCACTTCCAAATAATGAAATGGTTATACGTAACATAATTCATTTTGCCGTTGTTGCCTTTGCATGCTTAAATGTCAATCCTCGTTCTCGACCAACAATGAAATGTGTGTCGCAAAGTTTTGTCACCAAGCTTCCACGATTAAGTATTCCTTTCAGTGAAATTTCAGTGCAGCAACTAATGAGTGAAGAACTCAAAGCATTGTTTTATATTGCGAACCCTTGA 3144 0.3728 MTSQLQMEANAILNSGWWNTSDANFNISNRCNWHGISCNDAGSIIAININYSLGNELATLNLSTFHNLESLVIRPFNLYGTIPKEIGHLSKLTHLDLSNNLLIGLVPPSLGNLSKLTHLDISYNKLVGQVPHSLGNLSKLTHLDLSNNLLAGQVPPSLGNLSKLTHLDISYNNLVGQVPHSLGNPSKLTHLDLSANILKGQVPHSLGNLSKLTHLDLSANILKGQLPPSLGNLSKLTHLDLSANILKGQLPPSLANLSKLTHLDLSANILKGQVPHSLGNLSKLTHLDLSANILKGQLPPSLGNLSKLTHLDLSANFLQGHLPPSLGNLSKLTHLDLSANILKGQVPHSLGNLSKLTHLDLSANILKGQLPPSLGNLSKLTHLDLSANFLQGHLPPSLGNLSKLTHLDLSVNFLDGQVPPSLGNLSKLTHLNLSVNFLKGQLPPSLGNLSKLTHLVIYGNSLVGKIPPSIGNLRSLESLEISNNNIQGFLPFELGLLKNLTTLDLSHNRLNGNLPISLKNLTQLIYLNCSYNFFTGFLPYNFDQLTKLQVLLLSRNSIGGIFPISLKTLDISHNLLIGTLPSNLFPFIDYETSMDLSHNHISGEIPSELGYFQQLTLRNNNLTGTIPQSLCKVIYVDISYNCLKGPIPNCLHTTKIENSDVCSFNQFQPWSPHKKNNKLKHIVVIVIPILIILVIVFLLLICLNLHHNSSKKLHGNSTKTKNGDMFCIWNYDGMIAYDDIIKATEDFDMRYCIGTGAYGSVYKAQLPSGKVVALKKLHGYEAEVPSFDESFRNEVRILTEIKHKHIVKLYGFCLHKRIMFLIYQYMDRGSLFSVLYDDVEALQFKWRKRVNTIKGVAFALSYLHHDCTAPIVHRDVSTSNILLNSEWQASVCDFGTARLLQYDSSNRTIVAGTIGYIAPELAYTMAVNEKCDVYSFGVVALETLAGRHPGDLLSSLQSTSTQSVKLYQVLDQRLPLPNNEMVIRNIIHFAVVAFACLNVNPRSRPTMKCVSQSFVTKLPRLSIPFSEISVQQLMSEELKALFYIANP* 1048
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1472 1047 SUPERFAMILY L domain-like 302 661 - -
Mtr8g1472 1047 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 366 1040 - -
Mtr8g1472 1047 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 1 230 - -
Mtr8g1472 1047 PANTHER LRR RECEPTOR-LIKE KINASE FAMILY PROTEIN 222 374 - -
Mtr8g1472 1047 ProSitePatterns Protein kinases ATP-binding region signature. 753 775 IPR017441 GO:0005524
Mtr8g1472 1047 Gene3D Ribonuclease Inhibitor 349 426 IPR032675 -
Mtr8g1472 1047 SMART LRR_sd22_2 425 451 - -
Mtr8g1472 1047 SMART LRR_sd22_2 137 163 - -
Mtr8g1472 1047 SMART LRR_sd22_2 497 523 - -
Mtr8g1472 1047 SMART LRR_sd22_2 185 211 - -
Mtr8g1472 1047 SMART LRR_sd22_2 473 494 - -
Mtr8g1472 1047 SMART LRR_sd22_2 281 307 - -
Mtr8g1472 1047 SMART LRR_sd22_2 545 566 - -
Mtr8g1472 1047 SMART LRR_sd22_2 377 403 - -
Mtr8g1472 1047 SMART LRR_sd22_2 89 115 - -
Mtr8g1472 1047 SMART LRR_sd22_2 329 355 - -
Mtr8g1472 1047 SMART LRR_sd22_2 233 259 - -
Mtr8g1472 1047 ProSiteProfiles Protein kinase domain profile. 747 1015 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr8g1472 1047 Pfam Leucine Rich Repeat 403 425 IPR001611 GO:0005515
Mtr8g1472 1047 Pfam Leucine Rich Repeat 427 449 IPR001611 GO:0005515
Mtr8g1472 1047 Pfam Leucine Rich Repeat 379 401 IPR001611 GO:0005515
Mtr8g1472 1047 Pfam Leucine rich repeat 307 364 IPR001611 GO:0005515
Mtr8g1472 1047 Pfam Leucine rich repeat 499 558 IPR001611 GO:0005515
Mtr8g1472 1047 Pfam Leucine rich repeat 235 292 IPR001611 GO:0005515
Mtr8g1472 1047 Pfam Leucine rich repeat 91 150 IPR001611 GO:0005515
Mtr8g1472 1047 Pfam Leucine rich repeat 163 220 IPR001611 GO:0005515
Mtr8g1472 1047 Gene3D Phosphorylase Kinase; domain 1 708 825 - -
Mtr8g1472 1047 SUPERFAMILY Protein kinase-like (PK-like) 725 1012 IPR011009 -
Mtr8g1472 1047 Gene3D Ribonuclease Inhibitor 427 679 IPR032675 -
Mtr8g1472 1047 SMART LRR_typ_2 89 112 IPR003591 -
Mtr8g1472 1047 SMART LRR_typ_2 353 376 IPR003591 -
Mtr8g1472 1047 SMART LRR_typ_2 137 160 IPR003591 -
Mtr8g1472 1047 SMART LRR_typ_2 473 496 IPR003591 -
Mtr8g1472 1047 SMART LRR_typ_2 545 568 IPR003591 -
Mtr8g1472 1047 SMART LRR_typ_2 257 281 IPR003591 -
Mtr8g1472 1047 SMART LRR_typ_2 113 136 IPR003591 -
Mtr8g1472 1047 SMART LRR_typ_2 305 329 IPR003591 -
Mtr8g1472 1047 SMART LRR_typ_2 425 449 IPR003591 -
Mtr8g1472 1047 SMART LRR_typ_2 377 401 IPR003591 -
Mtr8g1472 1047 SMART LRR_typ_2 497 520 IPR003591 -
Mtr8g1472 1047 SMART LRR_typ_2 161 185 IPR003591 -
Mtr8g1472 1047 SMART LRR_typ_2 209 233 IPR003591 -
Mtr8g1472 1047 PRINTS Leucine-rich repeat signature 92 105 - -
Mtr8g1472 1047 PRINTS Leucine-rich repeat signature 497 510 - -
Mtr8g1472 1047 Gene3D Ribonuclease Inhibitor 2 153 IPR032675 -
Mtr8g1472 1047 Gene3D Ribonuclease Inhibitor 154 248 IPR032675 -
Mtr8g1472 1047 SUPERFAMILY RNI-like 61 367 - -
Mtr8g1472 1047 Pfam Protein kinase domain 753 1012 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr8g1472 1047 Gene3D Transferase(Phosphotransferase) domain 1 826 1020 - -
Mtr8g1472 1047 Gene3D Ribonuclease Inhibitor 249 348 IPR032675 -
Mtr8g1472 1047 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 1 230 - -
Mtr8g1472 1047 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 222 374 - -
Mtr8g1472 1047 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 366 1040 - -
Mtr8g1472 1047 ProSitePatterns Tyrosine protein kinases specific active-site signature. 871 883 IPR008266 GO:0004672|GO:0006468
Mtr8g1472 1047 ProSiteProfiles Leucine-rich repeat profile. 499 522 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1472 Mtr-Chr8 18860002 18863518 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1472 8 919 Receptor kinase-like Gene Family AT4G08850 37.182 0.0 572
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Mtr8g1472 Pkinase 7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1472 - - mtr:MTR_8g047230 1450.26