Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1430 ATGGATTCTGTAGGTAGCGATGGTGCGTCTCGTTTAGTCTCTGATAATCTATGTGCTCAACTCTGGCATGCATGTTCCGGATCTGTATACATCCCTAAGGTTGGGGAAAAGGTTTTCTATTTTCCTCAAGGACATGCAGAGCAGGTCGCAATACTTCAATATCAACAAGATCACAACATGGAAATTCCTAACTATCATTTGCCTTCTAAAATTTTATGCATAGTTGTGGGTGTTCAATTAATGGTAAAAGTCGACACAGATGAGATTTTTACTCTAGTTACATTATTTCCATTGCTCGAGCAACAAGAATATGTATTAGAGGACAATCATGCACTTCATAGTCCTGATGAAATCTACTCTTTTAGTAAGTTGCTCACTTCAATGGAAACAAGTACACAGGGTGGACTTTATATTCCAAAGCAACATGCAGATAGATGCTTCCCTCAGCTGGATATGACCCTTCAGCCACCAATGCAAGATCTAGTGGTGAAGGACTTGCAAGGAATTGAATGGAATTTTCGACATATTTATTGTGATCATGAGAGAGCACACTTGCTTACTAATGGTTGGAACACATTTGTAAACTCTAAAAATCTTCGTCCTGGAGATTCATGTATTTTTGTCAGTGGAGAGAATGGTGAAATTGGTATTGGGATTCGTCGAGCAATGAAACAACATAGCCACATATGCACTAAATTGTGTCAACAATCAAGTCAAAACATTCAACTTGGAGCATTGGCAGCTGTAGTCCATGCTGTTTCTATTGGAAGTCTGTTCCATCTCCAATACCACCCTTGGATTGCTCCCTTTGAATTTATGATTCCTCTGAAAACTTATGTTGAGTCCATTGAAAAAGACTACTCAATTGGAACGAGGGTACACATGTTGTCTGAAGTTGGAGGATGTCCAAGAAGGTATGGTACAATAGTTGGTAATGAAGATATTGATCCCATTAGGTGGCCAGGTTCAGAATGGAGATGTATCAAGGTGCAATGGGATTCCATGCTAAATATTGAGAGGGTTTGTCCATGGTGGATTGAGCCCTTGGGATCTCCCAAGATTATGTTGAAGGGCATTCCAATTTTCCCTTTACCAAATAAAACAGATGTACCTAACCCATCATTGCTTGGATTAAATAACTTCGCTAATGAGAATATAACTGGGAGTTCCTCTAAACCTGAATATCACAAAGTGGATATGGACTTGGAAGGTCAACAATACAATACTGGAAATGATAAAAAGTCAATCTTTTCCATTTTTGCTTTCTTTATATGTCTTTGCTTTTTTACATTTGTAATTTTTGTCTTTCGTCCTCTTCTATAA 1323 0.3832 MDSVGSDGASRLVSDNLCAQLWHACSGSVYIPKVGEKVFYFPQGHAEQVAILQYQQDHNMEIPNYHLPSKILCIVVGVQLMVKVDTDEIFTLVTLFPLLEQQEYVLEDNHALHSPDEIYSFSKLLTSMETSTQGGLYIPKQHADRCFPQLDMTLQPPMQDLVVKDLQGIEWNFRHIYCDHERAHLLTNGWNTFVNSKNLRPGDSCIFVSGENGEIGIGIRRAMKQHSHICTKLCQQSSQNIQLGALAAVVHAVSIGSLFHLQYHPWIAPFEFMIPLKTYVESIEKDYSIGTRVHMLSEVGGCPRRYGTIVGNEDIDPIRWPGSEWRCIKVQWDSMLNIERVCPWWIEPLGSPKIMLKGIPIFPLPNKTDVPNPSLLGLNNFANENITGSSSKPEYHKVDMDLEGQQYNTGNDKKSIFSIFAFFICLCFFTFVIFVFRPLL* 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1430 440 Gene3D - 286 354 - -
Mtr8g1430 440 Pfam Auxin response factor 249 329 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Mtr8g1430 440 SUPERFAMILY DNA-binding pseudobarrel domain 111 227 IPR015300 -
Mtr8g1430 440 Gene3D - 118 223 IPR015300 -
Mtr8g1430 440 ProSiteProfiles B3 DNA-binding domain profile. 121 223 IPR003340 GO:0003677
Mtr8g1430 440 CDD B3_DNA 120 221 IPR003340 GO:0003677
Mtr8g1430 440 PANTHER AUXIN RESPONSE FACTOR 10 412 - -
Mtr8g1430 440 SMART B3_2 121 223 IPR003340 GO:0003677
Mtr8g1430 440 Pfam B3 DNA binding domain 121 222 IPR003340 GO:0003677
Mtr8g1430 440 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 10 412 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1430 Mtr-Chr8 17789808 17803857 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1430 2 409 B3 DNA Binding Superfamily AT5G62000 41.905 3.24e-103 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mtr8g1430 B3 3.6e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1430 - - mtr:MTR_8g446900 756.133