Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1416 ATGGGTCGGCGCAAAATTGAGATTGCGATGGTGAAAAAACCAGAGGCGAGGCAAGTCACATTCTCAAAGCGCCGAATGGGGTTATTCAAAAAAGCAAACGAGCTTGCCATCTTGTGTGGGACCAAAATTGTGATTGTTGTATTCTCTCCCGGGAATAAACCTTACTCTTTTGGCCACCCTAGTGTTGATGCTATTGCGTCTAAATTTCTTCAACAAGAGCTCGATCTAAACGATGTTCTAGAAACCCCTTCCTCTAACATAGAGGATCTGAACCAACAACATGAGAAGGTGATGGCTGATATAGCTGAGGCTGAAAAGGAAGATAAGGCCAATGAGGAGATGCTAAAAGAATACAAATCAGCCAGCCCTAAGGAATGGAAAGATTCATTAATGGAGCTCAAGAATATGGTAAAATCACGTCTTTGTGATTTAGATATATCAGATTCTATGATGCTCCTCGCAAAGGAGCCCGTGGTTGGAATTAAAAACTAA 492 0.4187 MGRRKIEIAMVKKPEARQVTFSKRRMGLFKKANELAILCGTKIVIVVFSPGNKPYSFGHPSVDAIASKFLQQELDLNDVLETPSSNIEDLNQQHEKVMADIAEAEKEDKANEEMLKEYKSASPKEWKDSLMELKNMVKSRLCDLDISDSMMLLAKEPVVGIKN* 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1416 163 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 12 57 IPR002100 GO:0003677|GO:0046983
Mtr8g1416 163 SUPERFAMILY SRF-like 1 71 IPR036879 GO:0003677|GO:0046983
Mtr8g1416 163 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mtr8g1416 163 Gene3D - 14 85 IPR036879 GO:0003677|GO:0046983
Mtr8g1416 163 Coils Coil 87 121 - -
Mtr8g1416 163 PANTHER MADS BOX PROTEIN 2 162 - -
Mtr8g1416 163 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mtr8g1416 163 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mtr8g1416 163 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mtr8g1416 163 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mtr8g1416 163 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 2 162 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1416 Mtr-Chr8 17608737 17609228 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1416 1 155 Type I MADS-box Gene Family AT2G34440 38.596 2.81e-32 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mtr8g1416 SRF-TF 8e-23 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1416 - - mtr:MTR_4g131030 177.563