Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1353 ATGGGATATGGAACAAGAAAACTCTCAGATGAATATGAAGTTTCAGAAATTCTAGGTAGAGGTGGATTTTCTGTTGTTAGAAAAGGTACAAAAAAATCAAGCATTGAAGAAGAAAAATCACAATCACAAGTAGCAATCAAAACCCTAAGAAGGTTAGGTGCTTCAAATAACCCTAGTGGATTACCAAGAAAAAAAGATATTGGAGAAAAAAGCACAATAGGGTTCCCTACAATGAGACAAGTTTCAGTTTCAGATACATTACTAACAAATGAGATACTTGTAATGAGACGAATAGTCGAAAACGTTTCGCCACATCCAAATGTGATTGATCTTTATGATGTATATGAGGACACAAATGGTGTTCATCTTGTTCTTGAGCTTTGTTCCGGTGGTGAACTTTTCGATAGGATTGTTGCACAAGATAAGTATAGTGAGACTGAAGCTGCAACTGTGGTTCATCAAATAGCTTCAGGGTTAGAAGCTGTTCATAGAGCTAATATAGTTCATAGAGATTTGAAACCTGAAAATTGTCTTTTTTTAGATGTTAGGAAAGATTCTCCTCTTAAGATTATGGATTTTGGGTTGAGTTCTGTTGAAGAGTTTACTGATCCTGTTGTTGGTTTGTTTGGATCTATTGATTATGTTTCACCTGAGGCTCTTTCTCAAGGAAAGATTACTACTAAGAGTGATATGTGGTCTCTTGGGGTTATTCTATATATCTTACTTTCAGGGTATCCACCTTTCATTGCCCAAAATAATCGCCAAAAACAACAAATGATAATGAATGGGAATTTTAGTTTTTATGAGAAGACTTGGAAGGGAATTTCACAACCAGCAAAGAATTTGATTTCAAGTCTTTTAACCGTTGATCCTAGCAAGAGACCTAGTGCTCTTGAGCTTCTAAGTGATCCATGGGTCAAAGGTGAGAAAGCCAAAGATGTTCAAATGGACCCTGAGATTGTCTCAAGGCTACAAAGCTTTAATGCAAGACGTAAACTTCGTGCAGCTGCAATTGCTAGTGTTTGGAGCTCCACAATCTTCCTTAGAACAAAAAAATTGAAATCATTGGTTGGATCCTATGATCTTAAAGAAGAGGAAATTGAAAATCTCAGGATGCATTTCAAGAAGATATGTGCAGATAGAGACAATGCAACTCTGTCAGAGTTTGAGGAGGTGTTAAAAGCAATGAATATGTTATCATTGATCCCTTTTGCTTCTCGTATATTTGATTTGTTTGACAACAACCGTGATGGAACAGTTGACATGCGTGAGATACTTTGTGGATTTTCCAGTCTCAAGAATTCCAAAGGAGAGGATGCTCTTCGTTTGTGCTTCCAGATGTATGATACAGATAGATCAGGCTGCATCAGCAAAGAGGAAGTAGCATCCATGCTCAGGGCTTTGCCATATGATTGTCTTCCAACTGATATCACTGAACCTGGAAAATTGGATGAGATTTTTGACTTAATGGATGCTAATAATGATGGAAAAGTTACATTTGATGAATTCAAAGCTGCTATGCAAAGAGATAGCTCTCTTCAAGATGTAGTTCTCTCTTCTATTCGTCCATAA 1572 0.3683 MGYGTRKLSDEYEVSEILGRGGFSVVRKGTKKSSIEEEKSQSQVAIKTLRRLGASNNPSGLPRKKDIGEKSTIGFPTMRQVSVSDTLLTNEILVMRRIVENVSPHPNVIDLYDVYEDTNGVHLVLELCSGGELFDRIVAQDKYSETEAATVVHQIASGLEAVHRANIVHRDLKPENCLFLDVRKDSPLKIMDFGLSSVEEFTDPVVGLFGSIDYVSPEALSQGKITTKSDMWSLGVILYILLSGYPPFIAQNNRQKQQMIMNGNFSFYEKTWKGISQPAKNLISSLLTVDPSKRPSALELLSDPWVKGEKAKDVQMDPEIVSRLQSFNARRKLRAAAIASVWSSTIFLRTKKLKSLVGSYDLKEEEIENLRMHFKKICADRDNATLSEFEEVLKAMNMLSLIPFASRIFDLFDNNRDGTVDMREILCGFSSLKNSKGEDALRLCFQMYDTDRSGCISKEEVASMLRALPYDCLPTDITEPGKLDEIFDLMDANNDGKVTFDEFKAAMQRDSSLQDVVLSSIRP* 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1353 523 SUPERFAMILY EF-hand 350 514 IPR011992 -
Mtr8g1353 523 ProSitePatterns EF-hand calcium-binding domain. 413 425 IPR018247 -
Mtr8g1353 523 SUPERFAMILY Protein kinase-like (PK-like) 7 326 IPR011009 -
Mtr8g1353 523 ProSitePatterns EF-hand calcium-binding domain. 449 461 IPR018247 -
Mtr8g1353 523 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
Mtr8g1353 523 SMART efh_1 440 468 IPR002048 GO:0005509
Mtr8g1353 523 SMART efh_1 404 432 IPR002048 GO:0005509
Mtr8g1353 523 SMART efh_1 482 510 IPR002048 GO:0005509
Mtr8g1353 523 ProSiteProfiles EF-hand calcium-binding domain profile. 400 435 IPR002048 GO:0005509
Mtr8g1353 523 Pfam EF-hand domain pair 439 508 IPR002048 GO:0005509
Mtr8g1353 523 ProSitePatterns Protein kinases ATP-binding region signature. 18 47 IPR017441 GO:0005524
Mtr8g1353 523 Gene3D Phosphorylase Kinase; domain 1 5 134 - -
Mtr8g1353 523 ProSitePatterns EF-hand calcium-binding domain. 491 503 IPR018247 -
Mtr8g1353 523 ProSiteProfiles EF-hand calcium-binding domain profile. 478 513 IPR002048 GO:0005509
Mtr8g1353 523 ProSiteProfiles Protein kinase domain profile. 12 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr8g1353 523 PANTHER CALCIUM AND CALCIUM/CALMODULIN-DEPENDENT SERINE/THREONINE-PROTEIN KINASE 12 508 - -
Mtr8g1353 523 Pfam EF hand 408 424 IPR002048 GO:0005509
Mtr8g1353 523 SMART serkin_6 12 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr8g1353 523 Gene3D - 350 517 - -
Mtr8g1353 523 Pfam Protein kinase domain 88 306 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr8g1353 523 Gene3D Transferase(Phosphotransferase) domain 1 135 349 - -
Mtr8g1353 523 PANTHER SERINE/THREONINE-PROTEIN KINASE 12 508 - -
Mtr8g1353 523 CDD EFh 441 508 IPR002048 GO:0005509
Mtr8g1353 523 ProSiteProfiles EF-hand calcium-binding domain profile. 436 471 IPR002048 GO:0005509
Mtr8g1353 523 CDD STKc_CAMK 12 305 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1353 Mtr-Chr8 16667901 16671672 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1353 87 511 EF-hand Containing Proteins AT3G10660 36.842 2.44e-78 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMK1-DCAMKL Mtr8g1353 Pkinase 1.1e-55 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1353 K13412 - gmx:732616 882.093