Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1325 ATGGCTGACGACAATCCTCAGAAATTTACTGATCTACCTTTGTCTCCGGTTACTTTTGGTGTTCGGGATAAATTTCCAACTATAAGTAGGACTCTGGTTAAATTTCAAGCTGCAAGAATGACTTCGATTCAAGCAAAGGCAATTCCACTACTTTTGAGGGGAGATGATCTTGCTGCTTATTCAAGTAATGGTTCTGGGAAAACTCTTGCATACTTAATTCCAGCTTTGGACCATTTGTGCAAAAACAAATATGAACCTGATGATGGAATTATTGTGATGGTCTTGTGCCCAAATACTATGGTTGCTATACAGATTGATAGAGATATCAAGACAATTTTAAAAGATTCTCCTCAAACTCTTCAAACTATTGGACGTTTAATTGCATCACCAGGAGATAGATATGTAAGGAAAAACTTATTGATAGCTACACCTGCTGGGCTTCGTTATCATCATGCATATGATCCTGAAAGAATCAAATATGATAAGCTAAAGTTCCTCATTTTTGATGACCCATACTTGATTTTGAGATTCTCCGATCAGAAAAAATGGAATTGGGTTAGGTCAAATTTCCCGAAGGAACAACTCCAGATAGCTATATTTTCAGTTACAAAATTGAAGCGTGAATGTCTTCTTCGCCTGCTGCCAGAAGGGAGGAGACCTGGTGATTTTTCTGTTATTGATGAAGTCCAAAACCGACAATGGGTAACCAATGATAGATTGGAACAAGAATTTATTCTTGTTCCATGCGCCAAGCGGCTGATTACTCTCTATATCATGTTGAAGACCACTAAATCTAAAAAAGTGATGGTTTTTTTCTCTACAACTGAGAGTGTCAAATTCCATGAAGAACTTTTCACCTTCCTTGATGTAAAGTGTTATGGTGTTCATGGTGATCAAACCGTATCCGAACATTCAAAAATATATTATTCCTTCAGCAACGCAGAAGAGATGATCTTGTTGTGTACTAATATCGCTGCTTTTGGACTAAACATACCTGATGTGGACTTGATTGTGCAGTACGATCCGCCGATTGATCCAGAGGAATATATCCACAAGGTTGGTAGAACAGCTCGTGGGACAAGGAAAGGCAATGCTCTACTTTTTTTGATGCCTCACGAATTGAGATTTATTAGCTTCATGAAGACACATAAAGTCCTTATCAGAGAGCATATGTTTGACGAAAAGATGGCTCCAAATGTAGGATCTTATCTGTTGAGATTGGTTGCCGAGACTGAAGAGTTGATGGAAATGGCTACAAAAGCATACATTGAATACATATCCGCATACAATTTGATTACCATGAGGGATATATTTGGTATCCATCTTCTCGATAAAGAGGCTGTGGCTGCTTCATTCTGTCTTTGGAATCCTGTTACCGAAGCAATTTGA 1389 0.3823 MADDNPQKFTDLPLSPVTFGVRDKFPTISRTLVKFQAARMTSIQAKAIPLLLRGDDLAAYSSNGSGKTLAYLIPALDHLCKNKYEPDDGIIVMVLCPNTMVAIQIDRDIKTILKDSPQTLQTIGRLIASPGDRYVRKNLLIATPAGLRYHHAYDPERIKYDKLKFLIFDDPYLILRFSDQKKWNWVRSNFPKEQLQIAIFSVTKLKRECLLRLLPEGRRPGDFSVIDEVQNRQWVTNDRLEQEFILVPCAKRLITLYIMLKTTKSKKVMVFFSTTESVKFHEELFTFLDVKCYGVHGDQTVSEHSKIYYSFSNAEEMILLCTNIAAFGLNIPDVDLIVQYDPPIDPEEYIHKVGRTARGTRKGNALLFLMPHELRFISFMKTHKVLIREHMFDEKMAPNVGSYLLRLVAETEELMEMATKAYIEYISAYNLITMRDIFGIHLLDKEAVAASFCLWNPVTEAI* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1325 462 Gene3D - 24 212 IPR027417 -
Mtr8g1325 462 SMART ultradead3 36 243 IPR014001 -
Mtr8g1325 462 SMART helicmild6 279 360 IPR001650 -
Mtr8g1325 462 Pfam DEAD/DEAH box helicase 41 203 IPR011545 GO:0003676|GO:0005524
Mtr8g1325 462 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 252 404 IPR001650 -
Mtr8g1325 462 Pfam Helicase conserved C-terminal domain 255 359 IPR001650 -
Mtr8g1325 462 SMART DUF4217_3 399 462 IPR025313 -
Mtr8g1325 462 Gene3D - 236 453 IPR027417 -
Mtr8g1325 462 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 48 222 IPR014001 -
Mtr8g1325 462 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 48 372 IPR027417 -
Mtr8g1325 462 CDD SF2_C_DEAD 240 369 - -
Mtr8g1325 462 Pfam Domain of unknown function (DUF4217) 404 455 IPR025313 -
Mtr8g1325 462 PANTHER RNA HELICASE 26 457 - -
Mtr8g1325 462 PANTHER ATP-DEPENDENT RNA HELICASE DDX18 26 457 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1325 Mtr-Chr8 16337566 16344203 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1325 1 377 Eukaryotic Initiation Factors Gene Family AT3G19760 23.636 1.56e-18 85.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1325 K13179 - bvg:104888734 328.946