Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1277 ATGGCATCCTCAAATTCACCATGTGCAGCATGCAAGTTTCTACGCCGAAAATGCCAACCAGAATGTGCATTTGCACCTTATTTTCCACCTGATCAGCCACAAAAATTTGCAAATGTTCATAGAATTTTTGGAGCAAGCAATGTTACAAAGCTTCTCAATGATTTACACCCTCACCAACGTGAAGATGCTGTGAATTCACTTGCTTATGAAGCTGAGATGCGACTTCGAGATCCTGTTTATGGTTGTGTTGGTGTAATTTCTCTCCTTCAACACCAACTTCGTCAGCTTCAGATGGATCTTTATTGTGCTAAATCCGAACTTTCTCGTTTTCAAAACTTGAGTATCGCAGCGGCAGCTACTGCCGGTCATGGACTCATAACCGGCATGACAGGTGAGTCTGTCACGGCCGCTGCAGGTAATTACCACCACACGCAAAATACTGCTGGTGGTGGTAATAACAGTAACGGCCGTGACCATCGTTATCATCAACATCATCAGTTTTTTCCAAGGGATCAACATCAACAACATAATTTGGTTAGAAATTTTGATGGTGGAATTGGGAGCAACTATGATGCTAGTCTCTTGGCTATGAATATATCTGCTAGCTTAGGACAGATCAATCAACTTCAACATCATAGTGCTGCTGGTGGTGGTGGTGACGACCGCCGTACTGTTAACCGCTCCTAG 687 0.4367 MASSNSPCAACKFLRRKCQPECAFAPYFPPDQPQKFANVHRIFGASNVTKLLNDLHPHQREDAVNSLAYEAEMRLRDPVYGCVGVISLLQHQLRQLQMDLYCAKSELSRFQNLSIAAAATAGHGLITGMTGESVTAAAGNYHHTQNTAGGGNNSNGRDHRYHQHHQFFPRDQHQQHNLVRNFDGGIGSNYDASLLAMNISASLGQINQLQHHSAAGGGGDDRRTVNRS* 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1277 228 Pfam Lateral organ boundaries (LOB) domain 7 103 IPR004883 -
Mtr8g1277 228 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Mtr8g1277 228 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 3 188 - -
Mtr8g1277 228 PANTHER LOB DOMAIN-CONTAINING PROTEIN 6-LIKE 3 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1277 Mtr-Chr8 15636425 15638011 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1277 2 228 AS2 family AT1G65620 61.233 3.36e-77 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Mtr8g1277 LOB 3.4e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1277 - - mtr:MTR_8g040900 474.937