Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1261 ATGAGTCCTTCAGCTGAAACGGAGATGGAAGATACTAAGCTTTCTGTTGTCGAAAATGGTGACCAAGCTGTTTCTCGTTTTGCTGAGTTTTCAAAGAATGAGCTAGCATTGGATGAGAAAAGCTGTAAAGAAGCAATGGATCTGTTTGGAGAAACCAAACATCTTCTCATGGCAAATGTTTCATCAATGGGAAATGGAACGATAGAAGAAGCAGAGCGGTACTGGTTTGCTTTTATTTTATACTCTATCAAGAGGCTGACTCAGAAAAATGAGGAAAGTGAAAAAGAAGAGATTGAGAATACCGGTCTTACCTTGTGTCGAATATTGAGAGCAGCAAAGCTTAACATTGCAGATTTTTTTAAAGAACTTCCTCAGTTTGTTGTCAAAGCTGGTCCAATTTTAAGCAATCGATTCGGCTCTGATTGGGAAAACAAGCTTGAGGCAAAAGAGATGCATGCTAACACTATTCACCTGAAGATTCTTAGCAAGTATTATAAGCGTGTATTTGAAGAGTTCTTCGTGTCAACTGATGCAAATGTTGAAAATAAGTCGTCTGTTACGGGCCGTGTATCTGAGTGCCATCGTTTTGGATGGTTACTTTTCTTGGCCCTTCGTGTACATGCTTTCAGCCGTTTTAAAGACTTGGTGACTTGCACCAATGGTTTAATTTCTATCATGGCTATCCTAATTATTCATGTTCCGGCTCGTTTTCGGAATTTCAACATTCACGACTCTGCACGCTTTGTTAAGAAAAGCAGTAAAGGTGTGGACCTCCTTGCTTCACTTTGCAACATATATAACACTTCAGAAGATGAGTTGAGGAAAACCATGGAGCAAGCCAATAATTTAGTAGCAGATATATTGAAGAAGACGCCCTGTTTGGCATCTGAATGTGAAACTGAAAACCTAGAGGATTTTGATAAAGATGGTTTGACTTATTTTAAAGATCTCATGGAGGAATCATCTCTGGCGTCTAGTTTGAATATCTTAGAAAATGATTATGATCAAATGACTCGCAACAAGGGTGAACTGGATGAAAGGTTATTCATTAATGAGGATGACAGCCTGCTAGCTTCAGGAAGTTTGTCTGGAGGTTCTTCAGTTTCAGCAGGAGGTGTAAAGAGGAAATATGATTTGATGATGTCACCCGCCAAGACCATTACAAGTCCACTTTCACCCCAGCGCTCTCCTGCATCCCATGCTAATGGCATTCCAGGTAGCGCAAATTCAAAGATTGCTGCCACCCCTGTAAGCACAGCAATGACTACTGCAAAGTGGCTTCGAACTGTCATTTCTCCACTTCCATCAAAGCCGTCACAAGAGCTAGAGCGATTCTTGACTTCATGCGACAGAGATATTACTAGTGAGGTAGTACGCAGAGCACAGATTATATTACAAGCTATATTTCCTAGTAGTCCCCTTGGCGACCGATGTGTAACTGGAAGCCTGCAAAGTGCTAATCTCATGGACAATATATGGGCCGAACAACGAAGATTAGAAGCCATGAAGTTATACTATAGGTTGTTGGCAACAATGTGCCGAGCAGAAGCTCAAATACTTGGCAACAATTTAACTTCACTGCTCACTAATGAGAGGTTCCATAGGTGTATGCTTGCATGTTCTGCAGAATTAGTCCTGGCTACTCACAAGACTGTGACAATGTTGTTTCCTGCTGTACTGGAGAGGACTGGAATAACAGCTTTTGATCTTAGCAAGGTGATAGAAAGTTTCATTAGATATGAAGAATCTCTCCCAAGAGAATTGAGGCGACATCTTAATTCATTGGAGGAACGGCTTTTGGAGAGCTTGGTATGGGAAAAAGGTTCTTCGATGTATAATTCATTAGCAGTCGCTAGACCTGCCCTTTCTGCAGAAATCAATCGGCTTGGTATGTTAGCCGAACCAATGCCATCATTAGATGAAATTGCAATGCAAATTAACTTCTCTTGTGGAGGACTGCCTCCTGTGCCTTCCTTGCCTAAGCCTGAGACTTTGCCTGCTCAAAATGGGGATATGAGATCACCAAAGCGGCTCTGTACAGAGAATCGAAATGTTTTAGTGGAACGAAATTCTTTTACTTCACCGGTGAAAGATCGGCTTCTTCACTTAAGCAACCTTAAATCAAAACTACTCCCACCTCCTTTGCAATCAGCATTTGCCAGTCCAACAAAGCCGAATCCAGGAGGTGGAGGAGAAACATGTGCAGAAACTGGGATCAGCGTCTTTTTTAGCAAGATTGTTAAGTTGGGAGCAGTCAGAATAAGCGGAATGGTTGAAAGGCTACAATTATCTCAGCAGATAAGGGAGAATGTATACTCTCTTTTCCAGCGAATCCTAAATCAATGGACATCTCTCTTCTTCAACCGTCATATTGACCAAATCATTTTGTGTTGCTTCTATGGAGTAGCAAAGATTTCACAACTGAACCTAACTTTTAGGGAGATTATATACAACTACAGAAAGCAACCACAATGCAAGCCACAGGTTTTCCGTAGTGTATTTGTTGACTGGTCGTCGGCACGCCGTAATGGGGGATCTAGACATAGAACAGGACAGGAGCACATCGATATCATTTCATTTTACAACGAAGTTTTTATTCCCTCTGTAAAGCCACTTCTGGTTGAACTTGGCCCTGGTGGAGCAACTGTGAGAAGTGATCAAGTACCCGAAGCTAACAACAAAAATGACGGCCATTTAGTTCAAAATCCGGGATCTCCTAGAATATCACCTTTCCCAAGCCTTCCTGATATGTCCCCTAAAAAAGTGTCTGCCGCACACAATGTGTATGTGTCTCCATTACGGTCATCTAAGATGGATGCTCTAATTTCACATAGCTCCAAAAGCTATTATGCATGTGTTGGGGAGAGCACTCATGCCTATCAGAGCCCTTCAAAAGATCTGACTGCCATAAACAATCGGTTAAACAGCAACCGGAAAGTAAGAGGACCCCTCAAGTTTGATGACGTCGATGTGGGCTTGGTTAGCGACTCTATGGTTGCAAACAGCCTCTATCTGCAGAATGGAAGTTCCGCGTCATCATCGGGTGCACCGTTGAAGTCTGAGCAACCTGACTCTTAA 3078 0.4217 MSPSAETEMEDTKLSVVENGDQAVSRFAEFSKNELALDEKSCKEAMDLFGETKHLLMANVSSMGNGTIEEAERYWFAFILYSIKRLTQKNEESEKEEIENTGLTLCRILRAAKLNIADFFKELPQFVVKAGPILSNRFGSDWENKLEAKEMHANTIHLKILSKYYKRVFEEFFVSTDANVENKSSVTGRVSECHRFGWLLFLALRVHAFSRFKDLVTCTNGLISIMAILIIHVPARFRNFNIHDSARFVKKSSKGVDLLASLCNIYNTSEDELRKTMEQANNLVADILKKTPCLASECETENLEDFDKDGLTYFKDLMEESSLASSLNILENDYDQMTRNKGELDERLFINEDDSLLASGSLSGGSSVSAGGVKRKYDLMMSPAKTITSPLSPQRSPASHANGIPGSANSKIAATPVSTAMTTAKWLRTVISPLPSKPSQELERFLTSCDRDITSEVVRRAQIILQAIFPSSPLGDRCVTGSLQSANLMDNIWAEQRRLEAMKLYYRLLATMCRAEAQILGNNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRYEESLPRELRRHLNSLEERLLESLVWEKGSSMYNSLAVARPALSAEINRLGMLAEPMPSLDEIAMQINFSCGGLPPVPSLPKPETLPAQNGDMRSPKRLCTENRNVLVERNSFTSPVKDRLLHLSNLKSKLLPPPLQSAFASPTKPNPGGGGETCAETGISVFFSKIVKLGAVRISGMVERLQLSQQIRENVYSLFQRILNQWTSLFFNRHIDQIILCCFYGVAKISQLNLTFREIIYNYRKQPQCKPQVFRSVFVDWSSARRNGGSRHRTGQEHIDIISFYNEVFIPSVKPLLVELGPGGATVRSDQVPEANNKNDGHLVQNPGSPRISPFPSLPDMSPKKVSAAHNVYVSPLRSSKMDALISHSSKSYYACVGESTHAYQSPSKDLTAINNRLNSNRKVRGPLKFDDVDVGLVSDSMVANSLYLQNGSSASSSGAPLKSEQPDS* 1026
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1261 1025 Coils Coil 327 347 - -
Mtr8g1261 1025 Pfam Retinoblastoma-associated protein A domain 415 615 IPR002720 GO:0005634|GO:0051726
Mtr8g1261 1025 MobiDBLite consensus disorder prediction 1006 1025 - -
Mtr8g1261 1025 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 18 1012 IPR028309 GO:0006357|GO:0051726
Mtr8g1261 1025 SMART DUF3452_2 86 232 IPR024599 -
Mtr8g1261 1025 Pfam Retinoblastoma-associated protein B domain 739 870 IPR002719 GO:0005634|GO:0051726
Mtr8g1261 1025 SMART RB_A_2 415 615 IPR002720 GO:0005634|GO:0051726
Mtr8g1261 1025 MobiDBLite consensus disorder prediction 387 410 - -
Mtr8g1261 1025 SUPERFAMILY Cyclin-like 423 617 IPR036915 -
Mtr8g1261 1025 Coils Coil 266 290 - -
Mtr8g1261 1025 Pfam Domain of unknown function (DUF3452) 97 232 IPR024599 -
Mtr8g1261 1025 Gene3D - 193 351 - -
Mtr8g1261 1025 SUPERFAMILY Cyclin-like 737 913 IPR036915 -
Mtr8g1261 1025 PANTHER BNACNNG22930D PROTEIN 18 1012 - -
Mtr8g1261 1025 Gene3D - 418 605 - -
Mtr8g1261 1025 Gene3D - 699 895 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1261 19 1025 Core Cell Cycle Gene Families AT3G12280 69.223 0.0 1389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Mtr8g1261 RB_A 1.5e-62 CL0065
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1261 K04681 - gmx:100777805 1674.06