Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1249 ATGGCAGGTTCAGGTGTGGAGTGGCACGTGCGTCCACCAAACCCTAAAAATCCAATCGTCTTCTTCGATGTTACCATCGGTAACATCCCTGCTGGTAGAATCAAAATGGAACTCTTCGCTGATATTGCTCCCAAAACAGCTGAAAATTTCAGGCAGTTCTGCACGGGGGAGTACAGGAAAGCAGGTCTTCCTATTGGTTACAAGGGTTGTCAATTTCATAGAGTGATTAAGGATTTTATGATTCAGGCTGGTGATTATGTAAAGGGTGATGGTAGTGGATGTGCTTCCATCTATGGACTAAAGTTTGATGATGAAAATTTTACTGCCAAACACACTGGACCTGGTCTTCTATCAATGGCAAATAGTGGACCAAATACCAATGGTTGTCAGTTCTTTATAACTTGTGCAAAATGTGACTGGCTTGACAACAAGCATGTTGTTTTCGGGAGAGTGCTTGGAGATGGTCTTTTGGTAGTGAGGAAGATTGAGAATGTTGCAACTGGACCCAATAACCGGCCAAAATTAGCTTGTGTCATTGCTGAATGTGGTGAAATGTAA 558 0.4265 MAGSGVEWHVRPPNPKNPIVFFDVTIGNIPAGRIKMELFADIAPKTAENFRQFCTGEYRKAGLPIGYKGCQFHRVIKDFMIQAGDYVKGDGSGCASIYGLKFDDENFTAKHTGPGLLSMANSGPNTNGCQFFITCAKCDWLDNKHVVFGRVLGDGLLVVRKIENVATGPNNRPKLACVIAECGEM* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1249 185 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 22 183 IPR002130 GO:0000413|GO:0003755
Mtr8g1249 185 Gene3D - 7 185 IPR029000 -
Mtr8g1249 185 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 14 185 - -
Mtr8g1249 185 SUPERFAMILY Cyclophilin-like 8 185 IPR029000 -
Mtr8g1249 185 CDD cyclophilin_ABH_like 18 183 - -
Mtr8g1249 185 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 38 53 IPR002130 GO:0000413|GO:0003755
Mtr8g1249 185 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 72 84 IPR002130 GO:0000413|GO:0003755
Mtr8g1249 185 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 115 130 IPR002130 GO:0000413|GO:0003755
Mtr8g1249 185 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 130 142 IPR002130 GO:0000413|GO:0003755
Mtr8g1249 185 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 143 158 IPR002130 GO:0000413|GO:0003755
Mtr8g1249 185 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE H 14 185 - -
Mtr8g1249 185 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 21 184 IPR002130 GO:0000413|GO:0003755
Mtr8g1249 185 PIRSF Peptidylpro_ismrse 9 185 IPR024936 GO:0003755
Mtr8g1249 185 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 67 84 IPR020892 GO:0003755|GO:0006457
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1249 Mtr-Chr8 15327239 15332520 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1249 32 183 U-box Gene Family AT5G67530 43.791 1.28e-29 112
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1249 K09567 - gmx:100813835 381.333