Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1242 ATGATAGAGTTTTCTAGCATAGTTGATGATATTGCTAAGACAACCCTAATACGTGACCGCTATCATATTGGCTCGATAGAGGAATTACGTCTGCTATGTGGATTATCCTCATTTAGTCTATTATTACATGTTACCAAGAAGTATCTGATCGCTCCTGTTATAGCTGTGGGTGGTAGCATGCTACCTACAATGGATTCGTCACGAAGCTTCTATCTTTTTGAAACAATCTCACCTCGATTTGGTAAAATTGCTCGCGGTGATATTGTATGTTTACGCTCTCCTACAAACCCTAGAGAGAGCTACGTAAAGCGCGTGATTGGATTAGAGGGTGATAGCATTACATATGTTGCTGATCGTGGAAACGGTTATAAGCATGAAGCAGTTCTGGTTCCAAAGGGTCATGTTTGGGTAGAGGGTGATAACAAACTTAATAGCTACGACTCTAGAAGTTTCGGTCCAATTCCTTATGGCCTTCTTAAGAGTAAGATATTCTGGATGGTATGGCCGTGTAAAGATTTTGGATCGTTAAGGAATAAATGA 540 0.4019 MIEFSSIVDDIAKTTLIRDRYHIGSIEELRLLCGLSSFSLLLHVTKKYLIAPVIAVGGSMLPTMDSSRSFYLFETISPRFGKIARGDIVCLRSPTNPRESYVKRVIGLEGDSITYVADRGNGYKHEAVLVPKGHVWVEGDNKLNSYDSRSFGPIPYGLLKSKIFWMVWPCKDFGSLRNK* 180
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1242 179 CDD S26_SPase_I 52 163 IPR019533 GO:0004252|GO:0006465
Mtr8g1242 179 TIGRFAM sigpep_I_bact: signal peptidase I 40 118 IPR000223 GO:0006508|GO:0008236|GO:0016020
Mtr8g1242 179 PANTHER PEPTIDASE S24/S26A/S26B/S26C FAMILY PROTEIN 34 178 - -
Mtr8g1242 179 Gene3D Umud Fragment, subunit A 45 177 - -
Mtr8g1242 179 PRINTS Bacterial leader peptidase 1 (S26A) family signature 48 64 IPR000223 GO:0006508|GO:0008236|GO:0016020
Mtr8g1242 179 PRINTS Bacterial leader peptidase 1 (S26A) family signature 101 113 IPR000223 GO:0006508|GO:0008236|GO:0016020
Mtr8g1242 179 PRINTS Bacterial leader peptidase 1 (S26A) family signature 130 149 IPR000223 GO:0006508|GO:0008236|GO:0016020
Mtr8g1242 179 SUPERFAMILY LexA/Signal peptidase 48 176 IPR036286 -
Mtr8g1242 179 PANTHER PROTEASE FAMILY S26 MITOCHONDRIAL INNER MEMBRANE PROTEASE-RELATED 34 178 - -
Mtr8g1242 179 Pfam Signal peptidase, peptidase S26 126 168 IPR019533 GO:0004252|GO:0006465
Mtr8g1242 179 Pfam Signal peptidase, peptidase S26 40 117 IPR019533 GO:0004252|GO:0006465
Mtr8g1242 179 ProSitePatterns Signal peptidases I signature 3. 135 148 IPR019758 GO:0004252|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1242 Mtr-Chr8 15247584 15269575 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1242 60 176 MADS-box Gene Family AT1G29960 50.427 1.37e-39 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1242 K09647 - pvy:116144419 172.555