Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mtr8g1240 | ATGAACACCTTCAGTAACTTGCGTGGTCCAAAACCCTCAACATATGGCGTTTTCATCAGCTGCGGTGATGACACACGCTTCAGTTTCACCGGCTTCCTCTCTCATTCTCTCAATAATCGTGGCTTTTACACAGCTATTAATCATCGGGATTCAATTCAACACTGCAGGATTTTCATTTTCATCATTTCTCGTGATTACGCGTCTCGGTTAGATGAACTTGTCAACATCATGGATTTGTTTGCAAAGGGGAACGGTCGACAACAACGGATTTTGCCGGTTTACTATCATGTCAATCCCTCCGATGTTCGTCATCAGAGTGGTAGTTTTGGAGAAGCCTTGTCTTCTTTTTATAACAATCTTCTCGTATCTGATTTTGAGGTGGAAAAACGGAACACGGTTCTTCGTCAAGTTGCTGATTTTCGGGGCTGGCATCTCGATCCATCCAATGATGATGGAGTCTGCATGGTTGGGATATGTGGAAATCCTGGATTTGGGAAAACAACACTAGCTCGTGGAGTTTATCACTTTTGTGGCGGCATTGACTTTGATTGTTGTTTCTTTTTTGATAATGTGGGAGAGCATTTAATGAAACATGGATTAGTTCATCTCCAACAGATGCTTCTCTCTGAAATAGTTGGACACCACGCTGGTACTATGTTTGAAAGTTTGGATATAGGGATCCCATCAACAATAAAACACATTCTCTACCAAATGAAGGTTTTCTTGATTATTGAAGATGTTCATGATTCGGAGGTCTTGCGAGCCATTGTTGAACTTACTACTTTCTTTGGTTCTGGTAGCAAGGTCATCATTACTACTCAGGAAAAACATCTGCTAGAACATCATGGGATTGAAATAATATACGAGGTAGAAAAGTTGGATAAGAAAGAGGCTTTTCAGTTGCTTAGTTTGAAGGCTTTCAAATCTATGAATTTTAAATCCAATTATTTGAGCATTTTAGAACGAGCAGAAACTTATGCTTCTGGCCATCCATTCCTTTTGGAGGTTATAGGTTCCAACTTGGGTGGAAAAGATGTAGAAGAGTGTGAATTTGTACTAGACCAATACGAAATGATTCCAAATCACGAAATCCAAAAGATACTTCAAGTTAACTTTGATGCCTTGGGGAAACATTGCCAGAGGATGTTGATTAACATTGCAAATCAGCCCAAAGAACAGGAATTGTCATTGGTTGAAGACACACTTTATAAAATGTATGGCGCCTGCCCAAAACAAGATATCAGAGTCTTATTTGATAAAGCTTTTATAAAGAGTAATGAGCTCGGTCAAGTGAAATTACATGGTTTGACACTTGACATGGTTAGAGAAAATTCCCCCATCGAATATCCCTGCAAACATAGTAGGTTGCAGAAGGACATTCTAGAAGAAAACATGGAATATCCCTGCAAACGCAGTAGGTCGTCTAAGGATACTTTGGAAGAAACTGTGGAATACCACAAGCAAGAAATCCTACCCTCCTCTAATGATGGAAGCATGATGAGGGATCCGATGGAGGTGGAATATCAACCGTGTTCTTCCTCCTCTTCTCAAAGATCCATTCTTCATATTTCTGAGGTGTAA | 1581 | 0.3991 | MNTFSNLRGPKPSTYGVFISCGDDTRFSFTGFLSHSLNNRGFYTAINHRDSIQHCRIFIFIISRDYASRLDELVNIMDLFAKGNGRQQRILPVYYHVNPSDVRHQSGSFGEALSSFYNNLLVSDFEVEKRNTVLRQVADFRGWHLDPSNDDGVCMVGICGNPGFGKTTLARGVYHFCGGIDFDCCFFFDNVGEHLMKHGLVHLQQMLLSEIVGHHAGTMFESLDIGIPSTIKHILYQMKVFLIIEDVHDSEVLRAIVELTTFFGSGSKVIITTQEKHLLEHHGIEIIYEVEKLDKKEAFQLLSLKAFKSMNFKSNYLSILERAETYASGHPFLLEVIGSNLGGKDVEECEFVLDQYEMIPNHEIQKILQVNFDALGKHCQRMLINIANQPKEQELSLVEDTLYKMYGACPKQDIRVLFDKAFIKSNELGQVKLHGLTLDMVRENSPIEYPCKHSRLQKDILEENMEYPCKRSRSSKDTLEETVEYHKQEILPSSNDGSMMRDPMEVEYQPCSSSSSQRSILHISEV* | 527 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mtr8g1240 | 526 | PRINTS | Disease resistance protein signature | 155 | 170 | - | - | |
| Mtr8g1240 | 526 | PRINTS | Disease resistance protein signature | 234 | 248 | - | - | |
| Mtr8g1240 | 526 | PRINTS | Disease resistance protein signature | 327 | 341 | - | - | |
| Mtr8g1240 | 526 | MobiDBLite | consensus disorder prediction | 507 | 526 | - | - | |
| Mtr8g1240 | 526 | Gene3D | - | 292 | 376 | IPR042197 | - | |
| Mtr8g1240 | 526 | Gene3D | - | 2 | 128 | IPR035897 | - | |
| Mtr8g1240 | 526 | SUPERFAMILY | Toll/Interleukin receptor TIR domain | 11 | 117 | IPR035897 | - | |
| Mtr8g1240 | 526 | PANTHER | RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED | 13 | 132 | - | - | |
| Mtr8g1240 | 526 | PANTHER | RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED | 137 | 457 | - | - | |
| Mtr8g1240 | 526 | MobiDBLite | consensus disorder prediction | 508 | 526 | - | - | |
| Mtr8g1240 | 526 | Pfam | TIR domain | 40 | 119 | IPR000157 | GO:0007165 | |
| Mtr8g1240 | 526 | ProSiteProfiles | TIR domain profile. | 1 | 145 | IPR000157 | GO:0007165 | |
| Mtr8g1240 | 526 | Pfam | NB-ARC domain | 144 | 354 | IPR002182 | GO:0043531 | |
| Mtr8g1240 | 526 | SUPERFAMILY | "Winged helix" DNA-binding domain | 363 | 431 | IPR036390 | - | |
| Mtr8g1240 | 526 | PANTHER | LEUCINE-RICH REPEAT-CONTAINING PROTEIN | 13 | 132 | IPR044974 | GO:0006952 | |
| Mtr8g1240 | 526 | PANTHER | LEUCINE-RICH REPEAT-CONTAINING PROTEIN | 137 | 457 | IPR044974 | GO:0006952 | |
| Mtr8g1240 | 526 | Gene3D | - | 129 | 286 | IPR027417 | - | |
| Mtr8g1240 | 526 | SMART | till_3 | 14 | 140 | IPR000157 | GO:0007165 | |
| Mtr8g1240 | 526 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 145 | 384 | IPR027417 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mtr8g1240 | Mtr-Chr8 | 15232116 | 15236441 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mtr8g1240 | 156 | 443 | WRKY Transcription Factor Family | AT5G45050 | 28.276 | 4.06e-22 | 99.0 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mtr8g1240 | - | - | mtr:MTR_8g039960 | 1041.18 |