Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1237 ATGCAAACCCACTGTGGGCCCAAAGCCTTTAGATACTCAGCCTTCATCAGCTTCAGAGGTTTAGACACGCGTCGCGGATTTAGCGGCTTCCTCAACAAATATCTAACTGATCGAGGATTCCGCACTTTCTTCGACGATGGTGAAATTGAAATAGGGACCCAAATAACAGTACGAATTCATAAGGGAATCGAAGATTCAAGGATTTTCATCCCCATTTTATCGGAAAATTATGCATCTTCTTCCTTTTGCTTAGACGAACTTGTGAAGATTCTTGCAGAATTTCAAAAGGGGAATGGTCGATGGGTTTTTCCTGTTTTTTATTACGTTAGTATCTCTGATGTGAAAAATCAAACAGGCAGTTATGGACAAGCATTGACGGTTCTTAAGAACGGTGTCGAGCATGAGAGATTTGAAAAATGGATCAGCGCCTTAACTTCAATTGCTGACTTTCGCGGCTGCCATATGGAAAGGGCAAAGGGTATATATGAATTCCAGTACATATATGAGATTATTCAAGAGGTCTCTAAACATGTTGCTTGCTCAATCGGCCTAGATCATCGAGTAGAGAAAGTTATGCGTTGTTTGACTTCCGGATCTGACGATAATAGAGTCTACGTGGTAGGGATATGTGGAGTTCCTGGAATAGGGAAAACCACACTAGCTCGTGGAATTTATCTCTTCCATGGTGCCATTGAATTTGATTGTCGTTACTTTTTTGATAATGTGGAAGAGTATTTAAAGAAACATGGATTAGTACGTCTCCAACAGATGCTTCTATCTGAAATAGTTGGACACCACAACAGTACTAGGTTTAAAAGTTTGGATAAAGGGATCTCATCAACAATAAAACACATGCTCAACCAAAAAAAGGTTTTCTTGATTCTCGAAAACATTCATGATTCAGAAGTCTTGAAAGTCATTGTTAAACTGACTACTTTCTTTGGTTCTGGTAGCAAAGTCATCATTACTGCAAGGGAGAAATGTTTTCTAGAATTTCATGGCATTAAAAGAATATATGAGGTAGAAAGAATGAATAAGGCAGAGGCTTTTCAATTGCTTAATTTGAAAGCTTTTGATTCTATGAACATTAGTCCCTGTCATGTGACCATTTTAGAGGGTCTTGAAACTTATGCTTCTGGGCATCCATTCATATTGGAAATGATAGGTTCCTACTTGAGTGGGAAAAGTATAGAAGAATGTGAATCTGCATTGCACCAGTATAAACAAATTCCAAACGAAGACATCAAAATGATACTACAAGTAAGCTTTGATGCTTTGGATAACTTTCAGCAGAATATGTTGATTCACATTGCACTTCACCTCAAAGATCAGGAATTGGCGGTGGTTGAAGACCTGCTTCATTGTAAATATGGTGTGTGCCCGAAAGATGATATTAGAGTGTTGCTTAATAAATCTCTCATAAAGATTAATGAGAATGGTCAGGTGGTATTACATGGCTTAACACAAGACATGGTTAGAGATGATATTCCAGTAGAAGATCTTGGCTAA 1509 0.3817 MQTHCGPKAFRYSAFISFRGLDTRRGFSGFLNKYLTDRGFRTFFDDGEIEIGTQITVRIHKGIEDSRIFIPILSENYASSSFCLDELVKILAEFQKGNGRWVFPVFYYVSISDVKNQTGSYGQALTVLKNGVEHERFEKWISALTSIADFRGCHMERAKGIYEFQYIYEIIQEVSKHVACSIGLDHRVEKVMRCLTSGSDDNRVYVVGICGVPGIGKTTLARGIYLFHGAIEFDCRYFFDNVEEYLKKHGLVRLQQMLLSEIVGHHNSTRFKSLDKGISSTIKHMLNQKKVFLILENIHDSEVLKVIVKLTTFFGSGSKVIITAREKCFLEFHGIKRIYEVERMNKAEAFQLLNLKAFDSMNISPCHVTILEGLETYASGHPFILEMIGSYLSGKSIEECESALHQYKQIPNEDIKMILQVSFDALDNFQQNMLIHIALHLKDQELAVVEDLLHCKYGVCPKDDIRVLLNKSLIKINENGQVVLHGLTQDMVRDDIPVEDLG* 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1237 502 Pfam TIR domain 12 187 IPR000157 GO:0007165
Mtr8g1237 502 Gene3D - 9 173 IPR035897 -
Mtr8g1237 502 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 9 500 - -
Mtr8g1237 502 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 9 500 IPR044974 GO:0006952
Mtr8g1237 502 ProSiteProfiles TIR domain profile. 10 178 IPR000157 GO:0007165
Mtr8g1237 502 Pfam NB-ARC domain 186 425 IPR002182 GO:0043531
Mtr8g1237 502 SMART till_3 11 150 IPR000157 GO:0007165
Mtr8g1237 502 PRINTS Disease resistance protein signature 206 221 - -
Mtr8g1237 502 PRINTS Disease resistance protein signature 285 299 - -
Mtr8g1237 502 PRINTS Disease resistance protein signature 378 392 - -
Mtr8g1237 502 SUPERFAMILY "Winged helix" DNA-binding domain 414 489 IPR036390 -
Mtr8g1237 502 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 151 IPR035897 -
Mtr8g1237 502 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 436 IPR027417 -
Mtr8g1237 502 Gene3D - 174 335 IPR027417 -
Mtr8g1237 502 Gene3D - 343 427 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1237 Mtr-Chr8 15216650 15220301 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1237 204 493 WRKY Transcription Factor Family AT5G45050 31.633 1.49e-30 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1237 - - mtr:MTR_8g039800 818.535