Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1236 ATGGCCGGTTCAGGTTCGTATTCCTATGTCTACGATGTGTTCATCAGCTTTAGAGGGGAGGATACTCGGCTAGGGTTTACTGGATTTCTGTACAAGACTCTATCTGAAAAGGGATTCCACACCTTCATTGACCACCACGCTGACGCGGGAAGAGGAACAACGAAGACACTTGTAGATGCAATTGAAGAGTCCAGGATTGGGATTGTTGTTTTTTCTGAGAACTATGCTTCCTCCACATGGTGTCTGGATGAACTTGCGTACATTATTGACTCCTTTTCCAATAAGAAAAACTTCCGTCGATCTGTTTTCCCAGTATTTTACAACGTAGATCCTTCTCACGTGCGACATCAGAGTGGGATTTATGGACAGGCACTTGACTCGCACCAGAAGAACAACAACTTCAATTCAGAGAAATTGAACAAATGGAAGAACGCTCTCAAACAAGCAGCTAATTTGTCCGGTTTCCATTTTAAACATGGGGATGGATATGAATATGAATTAATTGACAAGATTGTAGACTTGGTCTCCACCAAAATTGATTCCACCCCTTATTTACGTGTTGTGGATCACCCAATTGGTCTCAATTATCGAGTGTTAGAACTAAACTGGCTTCTCAATCATAATACTCATGCTGCTACTGCCACCGTTGGATCCCATGGACTCAAACTGCTCGGTATCTACGGTATGGGTGGAATAGGGAAAACAACCCTTGCTCGAGCTGTATTCAATTTCATTTCCCCCCAATTTGATGCCTTTTGTTTCCTCGAAGATGTCAGAGAAAATTCAGCAAACCACGGCTTAGTACATCTTCAACAAACTCTTCTCGCCACCTTAGCTGGACAGAAGAAGAAGAAGAAAGACTTCCAATTAGCAAGCATCAGTGAAGGACTTCTGCTATTAAAGAATATGCTCCACCGCAAGAAGGTCCTTTTGGTTCTTGATGACGTTAACAGCTCAGATCAGTTGCAAGCTACTCTTGGAAGAGGCCTCGACACTTTTGGTTATGGAACCACCATCATCATTACTACCCGGGACAAACACTTCCTAACAACTCACGGGGTTCATACGACATACAAGGTAGAGGAGTTGACCAAGGATGAGTCCCTCGAGTTGCTTTCTTGGAATGCTTTCAAGACCAACAAAATTTATCCAGATTATATCGACCTGTTAAACCGCGTAACAACTTGCGCATCTGGCCTTCCTTTGGCTTTGGAGGTTATAGGCTCATACCTGCATGGGAAAGGAGTAAAAGAATGGGAATCTGCATTAGACTCCTATGAAAAGATTCCTTCTAAAGATATCCAAACCATACTTAAGCAAACCTACAATGCTTTGGATGGAGATCTCAGGCAACTTTTTCTCGACATCGCATGTTTCTTCAAAGGATACGAACTCTCAGAGGTTGAATACCTACTCAGTGCTCACCACGGTTACTGCTTCAAACCCCACCGTTTCAGATTCTTGCTGGAAACATCTCTCATCAAGATTGACGAGCACAATCATGTGAAAATGCATGACTTGATACGGGACATGGCCAGAGAAATCGTGAGGCAGGAATCACCCGACCACCCCGGCAAACGCAGCAGGCTATGGCTTACTACGGATATCGTCGAAGTTTTAGAAAAAAACACGGGAACAAGTGAAATTCAAACCATCGTTCTGGATTTCCCCAGATATGAAAAAATGGTACGGTGGGACGGAAAAGCCTTCCAGAAGATGACAGGCCTCCAGACACTTATTATTAGAAGTCTGTGTTTTGCTGAAGGTCCGAAGAATCTTCCAAATAGTTTAAGAGTGCTGGAGTGGTGGGGATATCCTTCACAGTCTTTGCCTTCTTATTTTTACCCCAAGAAATTAGCTGTTCTGAAGTTACCGCACAGTTCCTTTATGTCACTGGAGCTGTCCAAGTCAAAGAAGTTCGTAAATATGACACTTTTGAATTTTGATGAATGTAAAATTATAACACATATACCTGATGTATCTGGTGCCCCAAACTTAGAAAGGCTGTCTCTTGATTCTTGTGAGAATTTAGTTGAAATTCACGACTCTGTTGGATTCTTGGATAAACTTGAAATTCTGAATCTTGGGAGTTGCGCAAAGCTTCGGAATTTGCCACCCATCCATTTGACCTCTCTCCAACACCTCAATCTTTCACATTGTTCAAGTCTTGTGAGTTTTCCTGAGATATTAGGAAATATGAAAAATATTACAAGTCTTTCTTTGGAGTACACTGCCATAAGGGAATTTCCATATTCAATCGGAAATCTTCCCCGACTTAAAAGTTTAGAACTGCACGGATGTGGAAATCTTCTGTTACCAAGTAGCATTATTCTATTGTCAGAACTTGAGGAGTTGAGTATTTGGCAATGTGAAGGGTTGAAATCATATAAGCAAGACAAAGGTCCAGAAAAAGTTGGTTCAACAGTGTCTTCAAACGTGAAGTATATTGAGTTCTTTTCTTGCAATATATCGGACGACTTCATTCGAATAGGTCTTTCTTGGTTTTCAAATGTGGTAGAATTGAACCTTTCAGCAAACACTTTCACAGTTCTTCCAACATGCATCAAAGAATGCCGCTTTTTGACGATACTTATACTAGATTACTGCAGGCAACTTCGAGAAATCAGAGGAATTCCACCAAATTTAGAAATATTCTCTGCAATACGATGCACATCCTTGAACGATTTAGACCTCACGAATCTTCTTGTGTCCACCAAAGTCTGTTGTCCTTTGAGAGAGCTTGTTTTGGATGACTGTGAAAGTCTTCAAGAAATTAGAGGGATTCCACCCAGCATAGAACTTTTGTCCGCAAGAAACTGCAGATCCTTGACTATCTCGTGCAGAAGAATGTTACTGATTCAGGAGTTGCACGAGGCTGGAAATAAGAGCTTTTGTTTGCCCGGAACACAAATGCCGGATTGGTTTGAGCACCGTAGCAAAGGACATTCGATTTCTTTCTGGTTTCGTGGCAAGTTCCCTGCACTATCTCTCTGTTTTGTTGGACTCATGCATAAAATCCCTACCGGGTTCAGACCCATTGTGATCATCAATGGCAATATAATGAAAACAATGTTGCCAGCTGAAAAATGGTTTGATTTTGAGTTCCCAGTGTTAACTGATCATATATTTATTGTTGGTGAAAGACACATAAAATTTGAAGATAATATGGATGAAGTACTTTCAGAAAATGAATGGAATCATGCGGTGATTTCTATTGATATTGATTTTAAATGGAGCTCAAGTGGACTGTTTGCTGCGTGGATTGGACTCCATGTGATCAAACAAAAATGCAGCATGGACAGAATTCAATTCACCAATCCTTGCAACTGCTGA 3333 0.4128 MAGSGSYSYVYDVFISFRGEDTRLGFTGFLYKTLSEKGFHTFIDHHADAGRGTTKTLVDAIEESRIGIVVFSENYASSTWCLDELAYIIDSFSNKKNFRRSVFPVFYNVDPSHVRHQSGIYGQALDSHQKNNNFNSEKLNKWKNALKQAANLSGFHFKHGDGYEYELIDKIVDLVSTKIDSTPYLRVVDHPIGLNYRVLELNWLLNHNTHAATATVGSHGLKLLGIYGMGGIGKTTLARAVFNFISPQFDAFCFLEDVRENSANHGLVHLQQTLLATLAGQKKKKKDFQLASISEGLLLLKNMLHRKKVLLVLDDVNSSDQLQATLGRGLDTFGYGTTIIITTRDKHFLTTHGVHTTYKVEELTKDESLELLSWNAFKTNKIYPDYIDLLNRVTTCASGLPLALEVIGSYLHGKGVKEWESALDSYEKIPSKDIQTILKQTYNALDGDLRQLFLDIACFFKGYELSEVEYLLSAHHGYCFKPHRFRFLLETSLIKIDEHNHVKMHDLIRDMAREIVRQESPDHPGKRSRLWLTTDIVEVLEKNTGTSEIQTIVLDFPRYEKMVRWDGKAFQKMTGLQTLIIRSLCFAEGPKNLPNSLRVLEWWGYPSQSLPSYFYPKKLAVLKLPHSSFMSLELSKSKKFVNMTLLNFDECKIITHIPDVSGAPNLERLSLDSCENLVEIHDSVGFLDKLEILNLGSCAKLRNLPPIHLTSLQHLNLSHCSSLVSFPEILGNMKNITSLSLEYTAIREFPYSIGNLPRLKSLELHGCGNLLLPSSIILLSELEELSIWQCEGLKSYKQDKGPEKVGSTVSSNVKYIEFFSCNISDDFIRIGLSWFSNVVELNLSANTFTVLPTCIKECRFLTILILDYCRQLREIRGIPPNLEIFSAIRCTSLNDLDLTNLLVSTKVCCPLRELVLDDCESLQEIRGIPPSIELLSARNCRSLTISCRRMLLIQELHEAGNKSFCLPGTQMPDWFEHRSKGHSISFWFRGKFPALSLCFVGLMHKIPTGFRPIVIINGNIMKTMLPAEKWFDFEFPVLTDHIFIVGERHIKFEDNMDEVLSENEWNHAVISIDIDFKWSSSGLFAAWIGLHVIKQKCSMDRIQFTNPCNC* 1111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1236 1110 SUPERFAMILY "Winged helix" DNA-binding domain 433 541 IPR036390 -
Mtr8g1236 1110 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 456 IPR027417 -
Mtr8g1236 1110 Pfam TIR domain 11 179 IPR000157 GO:0007165
Mtr8g1236 1110 SUPERFAMILY L domain-like 570 898 - -
Mtr8g1236 1110 Gene3D - 5 184 IPR035897 -
Mtr8g1236 1110 ProSiteProfiles TIR domain profile. 9 179 IPR000157 GO:0007165
Mtr8g1236 1110 Pfam NB-ARC domain 220 446 IPR002182 GO:0043531
Mtr8g1236 1110 PRINTS Disease resistance protein signature 223 238 - -
Mtr8g1236 1110 PRINTS Disease resistance protein signature 303 317 - -
Mtr8g1236 1110 PRINTS Disease resistance protein signature 397 411 - -
Mtr8g1236 1110 PRINTS Disease resistance protein signature 707 723 - -
Mtr8g1236 1110 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 155 IPR035897 -
Mtr8g1236 1110 PANTHER ARCHAEAL ATPASE 21 896 - -
Mtr8g1236 1110 PANTHER ARCHAEAL ATPASE 903 1070 - -
Mtr8g1236 1110 Gene3D - 362 446 IPR042197 -
Mtr8g1236 1110 Gene3D Ribonuclease Inhibitor 534 799 IPR032675 -
Mtr8g1236 1110 Gene3D Ribonuclease Inhibitor 800 962 IPR032675 -
Mtr8g1236 1110 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 21 896 IPR044974 GO:0006952
Mtr8g1236 1110 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 903 1070 IPR044974 GO:0006952
Mtr8g1236 1110 SMART till_3 10 152 IPR000157 GO:0007165
Mtr8g1236 1110 Gene3D - 206 356 IPR027417 -
Mtr8g1236 1110 SMART AAA_5 220 366 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1236 Mtr-Chr8 15203599 15208436 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1236 6 796 WRKY Transcription Factor Family AT4G12020 31.204 6.05e-81 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1236 - - mtr:MTR_8g039870 2208.72