Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1234 ATGCAAACTCCAAGTGGCTTGCTTGGGCCAAAAGCCTTCAGATATTCTACCTTTATCAGCTTCAGAGGTTCAGACACTCGATGTGGTTTTAGTGGCTTCCTCAATAAATATCTGATTGATCGTGGATTCCGCACCTTCTTCGATGATGGGGAGCTTGAAAGAGGGACCCAAATAACGGTAGAAATTCCTAAGGCAATTGAAGAGTCCAGGATTTTCATCCCAGTTTTATCAGAAAATTATGCATCTTCTTCATTTTGCTTAGACGAACTTGTGAAGATCCTTGAAGAGTTTAAAAAAGGAAATGGTCGATGGGTTTTTCCAGTTTTCTATTACATTAATATCTCTGATGTGAAGAATCAAACTGGCAGTTATGGACAAGCATTGGCTGTTCACAAGAACCGTGTCATGCCTGAGAGGTTTGAGAAATGGATCAACGCCTTGGCTTCAGTCGCTGACTTTCGCGGCTGCCATATGGAAAGGGCAAGGGGTATATATGAATTCCGGTACATATATGAGATTATTCAAGAGGTCTCTAAACATGTTGCTTGCTCAATTGGCCTAGATCATCGAGTAGAGAAAGTTATGCGTTATTTGAATTCTAGTCCCAGATCAGACGATGATGGAGTTTGTTTGGTAGGGATATGTGGAGTTCCTGGAATAGGGAAAACGACACTAGCTCGTGGAGTTTATCACTTCGGTGGTGGAACTGAATTTGACTCTTGTTGCTTTTTTGATAATGTGGGAGAGTATGTAAAGAAACATGGATTAGTACATCTCCAACAGATGCTTCTCTCTGCAATAGTTGGACACAACAACAGTACTATGTTTGAAAATGTGGATGAAAGGGTGTGGAAAATAAAACATATGCTCAACCAAAAGAAGGTTTTCTTGGTTCTTGAAGACGTTCATGATTCTGAGGTCTTGAAAGCCATTGTTAAACTGAGTACTTTCTTTGGTTCTGGTAGCAAAGTCATCATTACTGCAAGGGAGAAATGTTTTCTAGAATTTCATGGCATTAAAAGAATATATGAGGTAGAAAGAATGAATAAGACAGAGGCTTTTCAATTGCTTAATTTGAAAGCTTTTGATTCTATGAACATTAGTCCCTGTCATGTGACCATTTTAGAGGGTCTTGAAACTTATGCTTCTGGGCATCCATTCATATTGGAAATGATAGGTTCCTACTTGAGTGGGAAAAGTATGGAAGAATGTGAATCTGCATTGCACCAGTATAAAGAAATTTCAAACAGAGACATCAAGAAGATTCTACAAGTAAGCTTTGACGCTTTGGAGAAATCTCAGCAGAATATGTTAATTCACATTGCACTTCACCTCAGAGAACAAGAATTGGAAATGGTTGAAAACTTGCTTCATCGTAAATATGGAGTGTGCCCGAAATATGATATTAGAGTTTTGCTTAATAAATCTCTCATAAAGATTAATGAGAATGGTCACGTGATAGTACATGTCTTGACACAAGACATGGTTAGAGATGATATTCCAGTAGAAGATCTTGGCTAA 1521 0.3853 MQTPSGLLGPKAFRYSTFISFRGSDTRCGFSGFLNKYLIDRGFRTFFDDGELERGTQITVEIPKAIEESRIFIPVLSENYASSSFCLDELVKILEEFKKGNGRWVFPVFYYINISDVKNQTGSYGQALAVHKNRVMPERFEKWINALASVADFRGCHMERARGIYEFRYIYEIIQEVSKHVACSIGLDHRVEKVMRYLNSSPRSDDDGVCLVGICGVPGIGKTTLARGVYHFGGGTEFDSCCFFDNVGEYVKKHGLVHLQQMLLSAIVGHNNSTMFENVDERVWKIKHMLNQKKVFLVLEDVHDSEVLKAIVKLSTFFGSGSKVIITAREKCFLEFHGIKRIYEVERMNKTEAFQLLNLKAFDSMNISPCHVTILEGLETYASGHPFILEMIGSYLSGKSMEECESALHQYKEISNRDIKKILQVSFDALEKSQQNMLIHIALHLREQELEMVENLLHRKYGVCPKYDIRVLLNKSLIKINENGHVIVHVLTQDMVRDDIPVEDLG* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1234 506 Gene3D - 347 431 IPR042197 -
Mtr8g1234 506 SMART till_3 14 153 IPR000157 GO:0007165
Mtr8g1234 506 ProSiteProfiles TIR domain profile. 13 181 IPR000157 GO:0007165
Mtr8g1234 506 Gene3D - 12 176 IPR035897 -
Mtr8g1234 506 Pfam NB-ARC domain 190 429 IPR002182 GO:0043531
Mtr8g1234 506 Gene3D - 177 339 IPR027417 -
Mtr8g1234 506 Pfam TIR domain 15 190 IPR000157 GO:0007165
Mtr8g1234 506 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 11 504 - -
Mtr8g1234 506 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 181 440 IPR027417 -
Mtr8g1234 506 SUPERFAMILY "Winged helix" DNA-binding domain 418 488 IPR036390 -
Mtr8g1234 506 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 11 504 IPR044974 GO:0006952
Mtr8g1234 506 PRINTS Disease resistance protein signature 211 226 - -
Mtr8g1234 506 PRINTS Disease resistance protein signature 289 303 - -
Mtr8g1234 506 PRINTS Disease resistance protein signature 382 396 - -
Mtr8g1234 506 SUPERFAMILY Toll/Interleukin receptor TIR domain 12 155 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1234 Mtr-Chr8 15165705 15178566 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1234 185 497 WRKY Transcription Factor Family AT5G45050 31.962 2.17e-33 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1234 - - mtr:MTR_8g039800 1023.46