Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1228 ATGACAAGACATGTCAAGGAGTTTCATAACAAGGATTCTTCTACCTCAATTGATGTTAAAATTCAGAAGCAGCACGTGTGCTCGGAAATTGGCTGTGGGAAGGCTTTCAAATTTGCATCAAAACTAGAAAAGCACAAAGATTCTCATGTTAAGCTGGAATCAATAGAGGCAGTGTGCTTATACCCTGGGTGCATGACGAGTTTTACTAATCTTCAGTGCCTTAGAGCTCACACTAAATCCTGCCACAAGTATGTGAACTGTGAGACTTGTGGGAAAAAGCAACTGCGTAAGAACATTAAAAGACACCTCCGTAAGCATGAAACTGGTAGTTCATCAGAGGTGTTTCATTGTGATTATAAGGATTGTAGCAGCACCTTCTCAAGTAAATCCAATCTGTGTAAGCATGTAAAAGCTGTCCATTTGCAAGATAAACCCTTTATTTGTGGCTTTCCAGATTGTGGCATGAGATTTGCTTATAAATATGTGAGAGATAACCATGAAAAATCCGGTTCGCATGTTTTTACCTTGGGGGATTTCAAAGAAACTGATGAACAATTCAGGTCAAGGAACAGGGGAGGGAGAAAGAGAAAGTGTCCTACAGTTGAAATGTTGGTTAGGAAAGAGAGTTGCTCCCCCAACTCAACTAGAGTTGCTTATGAAGGGTGTTGA 669 0.4036 MTRHVKEFHNKDSSTSIDVKIQKQHVCSEIGCGKAFKFASKLEKHKDSHVKLESIEAVCLYPGCMTSFTNLQCLRAHTKSCHKYVNCETCGKKQLRKNIKRHLRKHETGSSSEVFHCDYKDCSSTFSSKSNLCKHVKAVHLQDKPFICGFPDCGMRFAYKYVRDNHEKSGSHVFTLGDFKETDEQFRSRNRGGRKRKCPTVEMLVRKESCSPNSTRVAYEGC* 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1228 222 ProSitePatterns Zinc finger C2H2 type domain signature. 27 49 IPR013087 -
Mtr8g1228 222 SUPERFAMILY beta-beta-alpha zinc fingers 98 154 IPR036236 -
Mtr8g1228 222 PANTHER ZINC FINGER PROTEIN 1 213 - -
Mtr8g1228 222 Gene3D Classic Zinc Finger 111 202 - -
Mtr8g1228 222 Gene3D Classic Zinc Finger 20 107 - -
Mtr8g1228 222 SMART c2h2final6 57 82 IPR013087 -
Mtr8g1228 222 SMART c2h2final6 85 106 IPR013087 -
Mtr8g1228 222 SMART c2h2final6 146 172 IPR013087 -
Mtr8g1228 222 SMART c2h2final6 25 49 IPR013087 -
Mtr8g1228 222 SMART c2h2final6 115 140 IPR013087 -
Mtr8g1228 222 ProSiteProfiles Zinc finger C2H2 type domain profile. 115 145 IPR013087 -
Mtr8g1228 222 ProSitePatterns Zinc finger C2H2 type domain signature. 117 140 IPR013087 -
Mtr8g1228 222 PANTHER - 1 213 - -
Mtr8g1228 222 ProSiteProfiles Zinc finger C2H2 type domain profile. 25 54 IPR013087 -
Mtr8g1228 222 ProSitePatterns Zinc finger C2H2 type domain signature. 148 172 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1228 Mtr-Chr8 15100800 15102569 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1228 10 175 C2H2 Transcription Factor Family AT1G72050 60.843 3.69e-68 210
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr8g1228 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1228 K09191 - gmx:100800196 311.227