Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1176 ATGGTGAAGGAAACTGCTTACTATGATACATTAGGTGTTAGTGTTGATGCTTCTGCTGCAGATATCAAAAAGGCTTATTATGTTAAGGCAAGAATTGTTCACCCTGATAAAAATCCTGGGGATCCCAAGGCTGCAGAAAATTTTCAGCTGCTTGGTGAGGCCTACCAGGTTTTAAGCGATCCTGAGAAGCGTGAAGCATATGACAAAAATGGAAAGGCAGGCGTGTCACAAGATGCCATGATGGACCCTACAACTGTATTTGGAATGCTTTTTGGAAGTGAATTTTTCGAAGAATATATTGGAAAACTTGCACTTGCTTCTTTAGCATCTATAGAAGTTGAGGAAGATTCCCTGGAGCCTCAAGTTCGTATGCAGAAAATTCAAGAAAAGATGAAAGTATGGCAGAAGGAAAGAGAAGAGAAGCTGAAATCGGTTTTGATAGACCGTCTGCAACCATTTGTTGATGGTCGAGAAGAAGAATTTACAACATGGGCAAATTCTGAAGCACGTAATCTTTCAAAAGCTGCTTTTGGAGAGGCCATGCTACATACAATCGGTTATATCTACACACGAAAAGCAGCAAAAGAGCTTGGAAAGGATATTCGGTTTATGAACGTCCCCTTCTTGGCAGAGTGGGTTCGAGACAAAGGACACCGTATAAAGTCACAAGTGACGGCAGCTTCAGGAGCTGTGTCTCTAATTCAAATACAAGAAGAGCTCAAGAAGCTAAATCAAGGAGAAAATAAAGAAGAAAACATAATGAAAGCTCTTGAAGATAAGAAGGATGCCATGATTAATTCCTTATGGAAGATTAATGTCATTGATATTGAATCAACTTTGTCACGTGTTTGTCAAGCAGTTCTTAAAGATCCAAGTGTGTCCAAAGATGTTCTGGTGTCTCGGGCCAAAGCATTGAAACAGTTAGGAACGATCTTTCAAGGTGCTAAGGATGCTTTTAGGAGAGAAAACAGTCTACGCCAAGAAAATGAGAAGCAGGTGGAAGCTGGTTCCGCATCATAG 1020 0.4059 MVKETAYYDTLGVSVDASAADIKKAYYVKARIVHPDKNPGDPKAAENFQLLGEAYQVLSDPEKREAYDKNGKAGVSQDAMMDPTTVFGMLFGSEFFEEYIGKLALASLASIEVEEDSLEPQVRMQKIQEKMKVWQKEREEKLKSVLIDRLQPFVDGREEEFTTWANSEARNLSKAAFGEAMLHTIGYIYTRKAAKELGKDIRFMNVPFLAEWVRDKGHRIKSQVTAASGAVSLIQIQEELKKLNQGENKEENIMKALEDKKDAMINSLWKINVIDIESTLSRVCQAVLKDPSVSKDVLVSRAKALKQLGTIFQGAKDAFRRENSLRQENEKQVEAGSAS* 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1176 339 ProSitePatterns Nt-dnaJ domain signature. 48 67 IPR018253 -
Mtr8g1176 339 PANTHER BNAA01G05380D PROTEIN 1 338 - -
Mtr8g1176 339 ProSiteProfiles dnaJ domain profile. 6 71 IPR001623 -
Mtr8g1176 339 Pfam X-domain of DnaJ-containing 135 330 IPR026894 -
Mtr8g1176 339 CDD DnaJ 7 60 IPR001623 -
Mtr8g1176 339 Coils Coil 240 260 - -
Mtr8g1176 339 PANTHER DNAJ HEAT SHOCK N-TERMINAL DOMAIN-CONTAINING PROTEIN 1 338 - -
Mtr8g1176 339 PRINTS DnaJ domain signature 8 26 IPR001623 -
Mtr8g1176 339 PRINTS DnaJ domain signature 26 41 IPR001623 -
Mtr8g1176 339 PRINTS DnaJ domain signature 43 63 IPR001623 -
Mtr8g1176 339 PRINTS DnaJ domain signature 63 82 IPR001623 -
Mtr8g1176 339 Pfam DnaJ domain 7 68 IPR001623 -
Mtr8g1176 339 SMART dnaj_3 5 63 IPR001623 -
Mtr8g1176 339 SUPERFAMILY Chaperone J-domain 2 100 IPR036869 -
Mtr8g1176 339 Coils Coil 124 144 - -
Mtr8g1176 339 Gene3D DnaJ domain 1 87 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1176 Mtr-Chr8 14368634 14377312 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1176 7 68 Miscellaneous Gene Families AT1G16680 50.000 8.27e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1176 - - gmx:100787075 568.54