Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1160 ATGCCAGGGAAACCAGAAACTGATGATTGGAGAATAGAGCATAGTGAGCAGGTTCAGTTGCCATCTTCCATTTACTCTCATCATCAGCCTTGGTGGCTTGAAAATGGCTCCAAACCATCTTCAGCTGATCAGCTAAATGGTTCAATCATGAATGATGTCACACATTCAGAGCCTTTGGTTTCTCCTTCACTTTCTTTAACTGATAACTCAGGCGGGGACGTTGCCAAGGAGCACCGAAACATCAAACACACCCTGTCCTCAACCACAGCTAGCATGGACAAACACCTTTATCCAAATTCGCAGAGGGAACTTGTTGGTCATTCGATTGTTTTAACATCTCCTTATTCAAACGCACAATTCGGTCAAATCTTGAATGCGTATGGACAACAAGCTATGATGAATCCTCAGCTATACCAAATGCATCATGCTAGAATGCTTTTGCCACTTAAAATGGAAGAGGAGCCTGTGTATGTCAATGCAAAGCAGTATCATGGTATTTTGAGACGAAGACAGTCGCGCGCTAAGGCTGAACTTGAAAAGAAAGTTATTAAAGTTAGAAAGCCATATCTTCATGAATCCCGTCACCAACATGCTTTGAGAAGGGCAAGGGGAAATGGCGGCCGTTTTCTCAATACAAAAAAGCCCGAACACAACGATTCTAATGCCGCTCTAGAAAAAGGCAACAATACTGGCACAACATCGGGTACCAACAATGAGAATCAAGGCTCATCTAATGTGTCGCAGCACATGCACAAAATGCAGGGTTTCAACATCGGTTACCATGATGGAAATGGCTTTACAGCACTATGTCATTCACAGGCAAATGGAAAACAGGAGGGTGACTTCTTTGGTAAAAAGAGGGAATCAAATGGTGCTATTAAATGA 885 0.4282 MPGKPETDDWRIEHSEQVQLPSSIYSHHQPWWLENGSKPSSADQLNGSIMNDVTHSEPLVSPSLSLTDNSGGDVAKEHRNIKHTLSSTTASMDKHLYPNSQRELVGHSIVLTSPYSNAQFGQILNAYGQQAMMNPQLYQMHHARMLLPLKMEEEPVYVNAKQYHGILRRRQSRAKAELEKKVIKVRKPYLHESRHQHALRRARGNGGRFLNTKKPEHNDSNAALEKGNNTGTTSGTNNENQGSSNVSQHMHKMQGFNIGYHDGNGFTALCHSQANGKQEGDFFGKKRESNGAIK* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1160 294 Gene3D - 152 213 - -
Mtr8g1160 294 MobiDBLite consensus disorder prediction 222 246 - -
Mtr8g1160 294 MobiDBLite consensus disorder prediction 190 246 - -
Mtr8g1160 294 MobiDBLite consensus disorder prediction 36 73 - -
Mtr8g1160 294 PRINTS CCAAT-binding transcription factor subunit B signature 155 177 IPR001289 GO:0003700|GO:0006355
Mtr8g1160 294 PRINTS CCAAT-binding transcription factor subunit B signature 186 209 IPR001289 GO:0003700|GO:0006355
Mtr8g1160 294 PANTHER NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT A-1 65 259 - -
Mtr8g1160 294 SMART cbf3 151 212 IPR001289 GO:0003700|GO:0006355
Mtr8g1160 294 ProSitePatterns NF-YA/HAP2 subunit signature. 157 177 IPR018362 GO:0003677|GO:0016602
Mtr8g1160 294 MobiDBLite consensus disorder prediction 36 70 - -
Mtr8g1160 294 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 154 209 IPR001289 GO:0003700|GO:0006355
Mtr8g1160 294 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 65 259 IPR001289 GO:0003700|GO:0006355
Mtr8g1160 294 ProSiteProfiles NF-YA/HAP2 family profile. 152 212 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1160 Mtr-Chr8 14200680 14205193 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1160 27 245 CCAAT-HAP2 Transcription Factor Family AT5G12840 39.095 3.37e-40 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Mtr8g1160 CBFB_NFYA 5.1e-26 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1160 K08064 - gmx:100782085 405.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g1160 8 14200680 14205193 Mtr8g1160 8 14200680 14205193 ECH