Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1150 ATGAATGATGGAAGACAAATGGGGGTGCATTACATGGATGGTGGTGGTTTTCCTTATGCTGTGAATGAAAACTTTGTGGATTTCTTTCAAGGGATTAATCATGTGCCTGTCAATTATGCCTTTCCTGGTTCAATGCCTGATCAGGAAAGTGTCTACTGGTCAATGAACATGAGTCCTTATAAGTTTGGAATGTCTGGCCCTGGAAGTACATCTTATTATAATTCGTACGAGTTAAATGATAATTTGCCAAGAATGGAGAACAATAGGGTTGAATGGGAATACCCGTCTGAAGTAATCTCTGAGGAACCGGCTACATCGGATTCTCCGCCAAGAAGAGACGGAGTTAACATGCAGACTATCCCTGAAGAATGTAGTCCCAATCATCAAGAGTCGAGTAGTAGCCAGGTTGAGGTCATATGGCAAGACAACATTGATCCTGACAATATGACTTATGAGGAACTACTGGACCTAGGGGAGGCAGTTGGAACTCAAAGCCGAGGTCTTCCCCAAGAACTTATTGATACGCTTCCAACCTCGAAGTACAAATTTGGTAGCTTATTCAAAAGAAAAAATTCTGGGAAAAGGTGTGTAGTTTGCCAGATGACATACAGAAGAGGTGACCAGCAAATGAAATTGCCATGCAGTCATGTTTATCATGGTGAATGCATTACCAAATGGCTTAGCATTAACAAGAAATGTCCTGTTTGCAACACTGAGGTTTTTGGCGAGGAATCAACGCAGTAG 744 0.4194 MNDGRQMGVHYMDGGGFPYAVNENFVDFFQGINHVPVNYAFPGSMPDQESVYWSMNMSPYKFGMSGPGSTSYYNSYELNDNLPRMENNRVEWEYPSEVISEEPATSDSPPRRDGVNMQTIPEECSPNHQESSSSQVEVIWQDNIDPDNMTYEELLDLGEAVGTQSRGLPQELIDTLPTSKYKFGSLFKRKNSGKRCVVCQMTYRRGDQQMKLPCSHVYHGECITKWLSINKKCPVCNTEVFGEESTQ* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1150 247 SMART ring_2 196 236 IPR001841 -
Mtr8g1150 247 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BIG BROTHER 1 246 - -
Mtr8g1150 247 MobiDBLite consensus disorder prediction 120 134 - -
Mtr8g1150 247 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 158 241 IPR013083 -
Mtr8g1150 247 Pfam Ring finger domain 195 237 IPR001841 -
Mtr8g1150 247 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 246 IPR033276 GO:0004842|GO:0016567|GO:0046621
Mtr8g1150 247 SUPERFAMILY RING/U-box 195 241 - -
Mtr8g1150 247 MobiDBLite consensus disorder prediction 97 134 - -
Mtr8g1150 247 ProSiteProfiles Zinc finger RING-type profile. 196 237 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1150 Mtr-Chr8 14064191 14070338 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1150 9 247 C3H Transcription Factor Family AT3G63530 52.282 3.74e-90 265
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1150 K19045 - gmx:100785290 447.973