Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1146 ATGACAGATCCTCAATCAAATCTTTTTGATGAATGGTTCAACTTCATGCTCCTTAACCCTCATCATCACCACTCTTCTTCTTCTTCTTCTCACCAAACCAACATGTTTGAAATTCAACCCTCCTCCTCATCCTCCTCCATGAATCCTCCTTCTCCTCCTCTTAGAGAAGCTCTTCCTCTCATTAACAAACTAAGCCTCATAAATCATCAACAACAAAATGAACCCTCAAACATTTTTAATACTCAAACAATAGAAGATGAATTAGAAGACAAGAGAATGGAAACACATGGATATAATCATGATGATGATGATGATGATGTTGATGATGAAAGTGTTACTGTTGCACTACAAATAGGGCTTCCTAGTAATTCTTCTTCTGATCTTGGATCAAGGATGGTCTCATCAAATTGCATAGAAATGGCTGAAAAAGAGGAAGTTAATATGATTTCTGAACAACTACCTTTGGATAAATTGAATAACAAGGGTCAGTATTGGATTCCAACACCTTCTCAAATTCTCATTGGTCCTACACAATTCTCATGTCCTGTGTGCTCTAAAACTTTCAACAGATACAACAATCTTCAGATGCATATGTGGGGACATGGATCTCAATACAGAAAGGGGCCAGATTCTCTAAAAGGATCACAACCAACAGCAATGCTAAGGCTACCATGCTATTGTTGTGCACCAGGTTGCAAGCACAACATTGACCATCCTAGAGCAAAGCCTCTCAAAGATTTTAGAACTCTTCAAACACATTATAAGAGAAAGCATGGTATAAAACCTTATATGTGTAGAAAATGTGGCAAATCATTTGCAGTGAAAGGTGATTGGAGAACACATGAGAAGAATTGTGGAAAAATATGGTATTGTTTGTGTGGCTCAGATTTTAAACATAAAAGGTCTCTTAAAGACCATATTAAAGCCTTTGGTTATGGTCATGGTGCTTTTGGTATTGATTGCTTGCAAGAAGAAGATGAAGCAGGGTCAGAAATTGAACATGATGGTGGAAGTTCAATGTGA 1023 0.3734 MTDPQSNLFDEWFNFMLLNPHHHHSSSSSSHQTNMFEIQPSSSSSSMNPPSPPLREALPLINKLSLINHQQQNEPSNIFNTQTIEDELEDKRMETHGYNHDDDDDDVDDESVTVALQIGLPSNSSSDLGSRMVSSNCIEMAEKEEVNMISEQLPLDKLNNKGQYWIPTPSQILIGPTQFSCPVCSKTFNRYNNLQMHMWGHGSQYRKGPDSLKGSQPTAMLRLPCYCCAPGCKHNIDHPRAKPLKDFRTLQTHYKRKHGIKPYMCRKCGKSFAVKGDWRTHEKNCGKIWYCLCGSDFKHKRSLKDHIKAFGYGHGAFGIDCLQEEDEAGSEIEHDGGSSM* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1146 340 Gene3D Classic Zinc Finger 178 201 - -
Mtr8g1146 340 ProSitePatterns Zinc finger C2H2 type domain signature. 181 201 IPR013087 -
Mtr8g1146 340 SMART c2h2final6 263 283 IPR013087 -
Mtr8g1146 340 SMART c2h2final6 179 201 IPR013087 -
Mtr8g1146 340 SUPERFAMILY beta-beta-alpha zinc fingers 249 283 IPR036236 -
Mtr8g1146 340 MobiDBLite consensus disorder prediction 23 51 - -
Mtr8g1146 340 MobiDBLite consensus disorder prediction 23 56 - -
Mtr8g1146 340 PANTHER ZINC FINGER PROTEIN WIP2-LIKE 1 335 - -
Mtr8g1146 340 SUPERFAMILY beta-beta-alpha zinc fingers 172 201 IPR036236 -
Mtr8g1146 340 Pfam Zinc finger, C2H2 type 179 198 IPR013087 -
Mtr8g1146 340 Gene3D Classic Zinc Finger 240 312 - -
Mtr8g1146 340 PANTHER ZINC FINGER PROTEIN WIP2 1 335 IPR043584 GO:0003700|GO:0010468
Mtr8g1146 340 ProSiteProfiles Zinc finger C2H2 type domain profile. 263 283 IPR013087 -
Mtr8g1146 340 ProSiteProfiles Zinc finger C2H2 type domain profile. 179 206 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1146 Mtr-Chr8 13964963 13968185 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1146 1 333 C2H2 Transcription Factor Family AT3G57670 54.907 8.84e-125 361
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mtr8g1146 zf-C2H2_6 9.1e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1146 - - gmx:100794446 521.161
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g1146 8 13964963 13968185 Mtr8g1146 8 13964963 13968185 ECH