Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1139 ATGGACAAGGGACCACCTCCTACCCTCTTTGTCAATGATGGTTCGTTTATGGAGAGGTTCAGGCAGCTCCAACAAGAGCAGGAGAGGGGGAAAAATGCCAAGCCAGAGGACTCTAAACCAATTAAAGTTGTTTCAGGACCTCTGACTTCCAAACCCTCCATTAGTAAGGCTAATGATGCAAAGAAATCTTCACAGGGTGGTTCCAGTGGCAAACTTGCTTTCAGCTTGAAACAAAAGTCAAAGCTAGTACCACCCCCTGTTAAGTTGGCTGATGACGATGAAGATGAAATAGATGCTGGGTATGTTTCAATTGATGCACTGACAAAACGGCAAAAATTGGGTCAGGATGACGGCATTGAGCAATCATCAAGACAGCTTGATGTTGCACCTCCTCCCCCAAGTGATCCTACAGTGAAGAAAGTTGCTGACAAATTTGCAAGTTTTGTGGCTAAAAATGGAAGGCCATTTGAGGATGTTACATGGCAAAAAAACCCTGGAGACTCACCTTTCAAGTTTTTATTTGATGTTAAATGTTCTGACTATAAATATTATGAACATCGGCTTGCTCAAGAGGAGAAGGCCCTTTCACAGTCCAACGAACCACAGGCATATCAAAATGGGACAAGCATTCCATCTTCCAGACCAACAAATGGTCCTCAGAGATCGTCCCAGCAGCAGTCAACTTACCAAATCCCTGCCTCTGCTTTATATGATAGTGCTGACGTACCAAGGGGTTCTGGATCTGCAGGACAAGCATTTTCAGTTGGAAGCTCGGATGAGCCCGGTGGATCATCAAAGGCCAATTCTTTAGCACTAATGGAGTTTTACATGAAGAAAGCCGCACAGGAAGAAAAGTTCAAACAACCTAGGCATTCAAAAGATGAGATGCCCCCTCCTCCATCTCTTCAAGGCTCAACTTATGATGCTTCAGCTTCAGGGAAAAAAGGCCATCACATGGGTGATTATATTCCTCAGGAAGAACTGGAGAAGTTCTTGGCTAGCTGTAACGATGCAGCAGCTATGAAAGCTGCAAAGGAGGCTGCTGAGAGGGCCAAAATTCAGGCTAATAATGTGGGCCACAAGCTTTTATCAAAAATGGGTTGGAAAGAAGGTGAGGGTCTAGGGGGCTCTAGGAAGGGTATTGCAGATCCTATAATGGCAGGCAGTGTTAAGAAAGATAACTTGGGAGTAGGTGCTGTCCAACCTGGGGAGGTGACTCCTGAGGATGACATCTATGAGCAGTATAAAAAGCGGATGATGCTTGGCTACCGTCACAGGCCAAATCCTCTGAACAATCCTCGCAAGGCTTACTACTGA 1317 0.4533 MDKGPPPTLFVNDGSFMERFRQLQQEQERGKNAKPEDSKPIKVVSGPLTSKPSISKANDAKKSSQGGSSGKLAFSLKQKSKLVPPPVKLADDDEDEIDAGYVSIDALTKRQKLGQDDGIEQSSRQLDVAPPPPSDPTVKKVADKFASFVAKNGRPFEDVTWQKNPGDSPFKFLFDVKCSDYKYYEHRLAQEEKALSQSNEPQAYQNGTSIPSSRPTNGPQRSSQQQSTYQIPASALYDSADVPRGSGSAGQAFSVGSSDEPGGSSKANSLALMEFYMKKAAQEEKFKQPRHSKDEMPPPPSLQGSTYDASASGKKGHHMGDYIPQEELEKFLASCNDAAAMKAAKEAAERAKIQANNVGHKLLSKMGWKEGEGLGGSRKGIADPIMAGSVKKDNLGVGAVQPGEVTPEDDIYEQYKKRMMLGYRHRPNPLNNPRKAYY* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1139 438 Pfam Surp module 140 190 IPR000061 GO:0003723|GO:0006396
Mtr8g1139 438 ProSiteProfiles G-patch domain profile. 355 402 IPR000467 GO:0003676
Mtr8g1139 438 MobiDBLite consensus disorder prediction 112 138 - -
Mtr8g1139 438 PANTHER ARGININE/SERINE RICH SPLICING FACTOR SF4/14 3 438 IPR040169 -
Mtr8g1139 438 SMART surpneu2 139 193 IPR000061 GO:0003723|GO:0006396
Mtr8g1139 438 MobiDBLite consensus disorder prediction 281 316 - -
Mtr8g1139 438 Gene3D Surp module 113 198 IPR035967 GO:0003723|GO:0006396
Mtr8g1139 438 MobiDBLite consensus disorder prediction 194 234 - -
Mtr8g1139 438 MobiDBLite consensus disorder prediction 48 75 - -
Mtr8g1139 438 ProSiteProfiles SURP motif repeat profile. 141 184 IPR000061 GO:0003723|GO:0006396
Mtr8g1139 438 PANTHER SURP AND G PATCH DOMAIN-CONTAINING 1 3 438 - -
Mtr8g1139 438 MobiDBLite consensus disorder prediction 23 38 - -
Mtr8g1139 438 SMART G-patch_5 353 400 IPR000467 GO:0003676
Mtr8g1139 438 MobiDBLite consensus disorder prediction 250 265 - -
Mtr8g1139 438 MobiDBLite consensus disorder prediction 23 77 - -
Mtr8g1139 438 MobiDBLite consensus disorder prediction 192 267 - -
Mtr8g1139 438 Pfam G-patch domain 356 399 IPR000467 GO:0003676
Mtr8g1139 438 SUPERFAMILY Surp module (SWAP domain) 123 196 IPR035967 GO:0003723|GO:0006396
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1139 Mtr-Chr8 13889211 13894611 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1139 341 438 C2H2 Transcription Factor Family AT5G26610 31.858 3.63e-08 52.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1139 K13096 - gmx:100786213 633.639