Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1136 ATGAGCATTGTGTATACTCAAGCATTCAACTACTCTGAAGGTGGTTCAATGAAGAACACAGAAATGGATTCAAAATTTGGTTACTCACAAACACAACAACATTGTCTCCAAAACAATTCCGGCTTAACGCGGTATCGTTCAGCTCCAAGCTCATTACTTACAAGCCTTGTAGACAGAAGCATTGGATTTTTCAATGAAGAAACTTTCAGAAATGAGAATCATCAGCAGCAGCATTATTCTACCTCTACAAGTTCAGAAATGGAAACAATGTTTACTAATTCAGAATCTTTCTCAGTGAAACAAGAAGAAAAGGACCCTTTTTCACATGGAATACAATACAATGATTACTCTTATGGATCTCAAAATCAGATAAATTATCAAACTCAACATAATCAAGGATTTCCAAATGGTTCTTTAGGTGTTGAAGACAATGTTTTTGATGGTTCTTCTAATAATTGCTCCAATCTTATTAGGCAAAAGAGTTCTCCTGCTGAGTTTTTCTCCAATTATTCAGTTGATAGTGGTTTAGGATGTGCTAATGGACAAGCTACTACATCAACTAGTGGATTACATGGTACTTTGAACTTCTCATCTAGAACATCCTCTTGCTCTATCAAGATGCCACTAATTGTTGAAAATGAACATGAAGTTCTTCAAGCAAATTGTATTAAAAGTAGAAACATGGGAAATGATAATTGTATCACAAAATCTTACATGCCTAGCTTCACCAATGACTACTGGGATAGTTCTACATTCAGTGCTCCAAAAAATGCTTCTAATAAGGGTGAATTCATGTTTTCCACTTCAAATGCTTTGGAAACTCAGAATGTAGATTTTGGATACCAAAAACTTGGTTTGACCCATCATTTGAGTCTGCCAAGCTCTTCTTCCAAGATGGCTACTATGGAGAAGTTTTTACACCTTCAAGGATCTGTTCCATGTAAAATTCGTGCCAAAAGAGGCTTTGCCACTCACCCTAGAAGCATTGCAGAGAGGGAAAGAAGAATAAGAATTAGTGCAAGAATAAAAAAACTGCAAGACCTTTTCCCGAATGCAGATAAGCAAAATAGCACAGCTGATATGTTGGATGAAGCAGTTGAGTACATTAAAGACCTCAGGAAACAACTTAAGATACTAACAGAGACTAAGGCAAAGTGCAGTTGTACAAGTAATTAG 1176 0.3614 MSIVYTQAFNYSEGGSMKNTEMDSKFGYSQTQQHCLQNNSGLTRYRSAPSSLLTSLVDRSIGFFNEETFRNENHQQQHYSTSTSSEMETMFTNSESFSVKQEEKDPFSHGIQYNDYSYGSQNQINYQTQHNQGFPNGSLGVEDNVFDGSSNNCSNLIRQKSSPAEFFSNYSVDSGLGCANGQATTSTSGLHGTLNFSSRTSSCSIKMPLIVENEHEVLQANCIKSRNMGNDNCITKSYMPSFTNDYWDSSTFSAPKNASNKGEFMFSTSNALETQNVDFGYQKLGLTHHLSLPSSSSKMATMEKFLHLQGSVPCKIRAKRGFATHPRSIAERERRIRISARIKKLQDLFPNADKQNSTADMLDEAVEYIKDLRKQLKILTETKAKCSCTSN* 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1136 391 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 324 386 IPR036638 GO:0046983
Mtr8g1136 391 CDD bHLH_AtbHLH_like 327 379 IPR045239 -
Mtr8g1136 391 Pfam Helix-loop-helix DNA-binding domain 328 372 IPR011598 GO:0046983
Mtr8g1136 391 Gene3D - 324 390 IPR036638 GO:0046983
Mtr8g1136 391 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 322 372 IPR011598 GO:0046983
Mtr8g1136 391 SMART finulus 328 378 IPR011598 GO:0046983
Mtr8g1136 391 Coils Coil 362 382 - -
Mtr8g1136 391 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 31 390 - -
Mtr8g1136 391 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 31 390 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1136 Mtr-Chr8 13847320 13852007 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1136 40 378 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G42280 36.216 1.46e-45 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr8g1136 HLH 7.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1136 - - cam:101493473 520.005
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr3g0668 3 9204256 9207586 Mtr8g1136 8 13847320 13852007 ECH
Mtr8g1136 8 13847320 13852007 Mtr8g1136 8 13847320 13852007 ECH