Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1127 ATGACTAGAAGAAAGGTGAAACTTGCCTTCATTGTCAATGACGCTGCAAGAAAAGTAACATACAAGAAAAGGATGAAGGGTTTATTGAAGAAGATTGACGAACTAAGCACGCTTTGTGGAATTGAAGCTTGTGCTATAGTTTACGGTCCTTATGAACCACAACCTGAGATTTGGCCATCCCCTTGGGGAGTCCAAAATGTGCTCTCAAAATTCAGTATGATGCCTGAAATATTAATGGAACAAAGCAAGAAAATGATGAATCAAGAGACTTTCATGAACCAAAGGGTGATGAAGGCTAAAGAGCAGGTGAAAAAGCAACAAAAAGACAACAAGCAGAAAGAGATAGCCCTTCTAATGTTTCAATGCCTGAATGCAGGGAAAATTGTGGACAACAATATGTCAATGGTTGATGTGAATAATCTTGCTTGGTTGATTGACCAAAATTTGAAGGACATTGGAAGAAGGTTGGAAGCAGTGGACAATAATGGTCAAAATCAAATCATGACTACTCCAACTCAGAGCGAAGTCCAATTCCAAATGGCACCACCACCACTTGTCAAGAAGGAAGAAATGGCAATGATGGGCCATGACCATTTTGGGATAACTATGAGCAATGGTGACATCATGCAAAGACAATTATTTATGAATTTGATGATGAATGATAATAGAGATGAGAATGTCCCATTTGGTCATCCTCATGATGCTAGTCTTCAAAATGGATTTTGGCCTAATCTACTACCTTGA 744 0.3884 MTRRKVKLAFIVNDAARKVTYKKRMKGLLKKIDELSTLCGIEACAIVYGPYEPQPEIWPSPWGVQNVLSKFSMMPEILMEQSKKMMNQETFMNQRVMKAKEQVKKQQKDNKQKEIALLMFQCLNAGKIVDNNMSMVDVNNLAWLIDQNLKDIGRRLEAVDNNGQNQIMTTPTQSEVQFQMAPPPLVKKEEMAMMGHDHFGITMSNGDIMQRQLFMNLMMNDNRDENVPFGHPHDASLQNGFWPNLLP* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1127 247 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mtr8g1127 247 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mtr8g1127 247 CDD MADS_SRF_like 2 87 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mtr8g1127 247 SUPERFAMILY SRF-like 1 76 IPR036879 GO:0003677|GO:0046983
Mtr8g1127 247 Coils Coil 96 116 - -
Mtr8g1127 247 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 193 - -
Mtr8g1127 247 Gene3D - 13 118 IPR036879 GO:0003677|GO:0046983
Mtr8g1127 247 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mtr8g1127 247 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Mtr8g1127 247 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Mtr8g1127 247 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 193 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1127 Mtr-Chr8 13747656 13748810 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1127 1 163 Type I MADS-box Gene Family AT5G48670 53.374 5.91e-53 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mtr8g1127 SRF-TF 5.9e-16 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1127 - - mtr:MTR_4g032620 281.182