LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr8g1082	ATGGGAAGAGGAAGAGTTGAATTGAAGAGAATAGAGAACAAAATAAACCGGCAGGTAACTTTCTCAAAAAGAAGAAATGGTTTGCTCAAGAAAGCTTATGAACTGTCTGTTCTCTGTGATGCTGAAGTTGCCCTTATCATTTTCTCTAGCCGTGGCAAACTCTATGAATTTGGAAGTGTTGGAACTACCAAAACTATTGAGCGATACCAACGGTGCTCATTTAATCCTCAACAAGATGACCACCAAATTGATTGTGACACACAGAGTTGGTACCAAGAGGTGTCTAAACTGAAGGCAAAGTATGAATCTCTTCAAAGGACTCAGAGGCAGTTGCTTGGGGAAGATCTTGGACCTTTGAACATAAAGGAGTTGCAGAATCTTGAAAAACAGCTTGAAGGTGCATTAGCACAAGCAAGGCAAAGAAAGACACAAATTATGATTGAACAAATGGAAGAGCTTCGCAAAAGGGAACGTCATCTAGGAGACTTGAACAAGCAACTAAGGATCAAGCTTGAAGGAGAGGGATTTAATCTTAAAGCAATGGAAAGTTTATGGAGCTCTAATTCAGTTGCTGGAAATTGCAACTTTACCTTTCAGCAGCCTCAAACTAACCCTATGAATATGAGTATGGATATCCAAGCAGAACCCTTTTTGCAAATAGGATACCAACAGTACCAGTATGTTCAAGCTGAACCATCTAATGTTTCCAAGAGCATGGCTTGTGAGACTAACTTCATGCAGGGATGGATGCTTTAA	756	0.4008	MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSVGTTKTIERYQRCSFNPQQDDHQIDCDTQSWYQEVSKLKAKYESLQRTQRQLLGEDLGPLNIKELQNLEKQLEGALAQARQRKTQIMIEQMEELRKRERHLGDLNKQLRIKLEGEGFNLKAMESLWSSNSVAGNCNFTFQQPQTNPMNMSMDIQAEPFLQIGYQQYQYVQAEPSNVSKSMACETNFMQGWML*	252

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr8g1082	251	ProSitePatterns	MADS-box domain signature.	3	57	IPR002100	GO:0003677\|GO:0046983
	Mtr8g1082	251	PRINTS	MADS domain signature	3	23	IPR002100	GO:0003677\|GO:0046983
	Mtr8g1082	251	PRINTS	MADS domain signature	23	38	IPR002100	GO:0003677\|GO:0046983
	Mtr8g1082	251	PRINTS	MADS domain signature	38	59	IPR002100	GO:0003677\|GO:0046983
	Mtr8g1082	251	ProSiteProfiles	K-box domain profile.	87	177	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Mtr8g1082	251	ProSiteProfiles	MADS-box domain profile.	1	61	IPR002100	GO:0003677\|GO:0046983
	Mtr8g1082	251	Pfam	SRF-type transcription factor (DNA-binding and dimerisation domain)	10	57	IPR002100	GO:0003677\|GO:0046983
	Mtr8g1082	251	PANTHER	MADS BOX PROTEIN	1	234	-	-
	Mtr8g1082	251	CDD	MADS_MEF2_like	2	73	IPR033896	GO:0000977\|GO:0045944
	Mtr8g1082	251	SUPERFAMILY	SRF-like	2	80	IPR036879	GO:0003677\|GO:0046983
	Mtr8g1082	251	Coils	Coil	121	144	-	-
	Mtr8g1082	251	Pfam	K-box region	86	171	IPR002487	GO:0003700\|GO:0005634\|GO:0006355
	Mtr8g1082	251	Coils	Coil	94	114	-	-
	Mtr8g1082	251	Gene3D	-	13	90	IPR036879	GO:0003677\|GO:0046983
	Mtr8g1082	251	SMART	madsneu2	1	60	IPR002100	GO:0003677\|GO:0046983
	Mtr8g1082	251	PANTHER	MADS-BOX TRANSCRIPTION FACTOR 17	1	234	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr8g1082	Mtr-Chr8	13244488	13249330	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr8g1082	1	251	MADS-box Gene Family	AT2G45650	66.667	2.08e-113	324

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MADS-MIKC	Mtr8g1082		K-box	2.3e-29	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr8g1082	K09264		-	gmx:100820061	413.305

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mtr8g1082	8	13244488	13249330	Mtr8g1082	8	13244488	13249330	ECH
	Mtr8g1082	8	13244488	13249330	Mtr7g1905	7	35171949	35178667	ECH
	Mtr4g3667	4	50447964	50455552	Mtr8g1082	8	13244488	13249330	ECH