Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mtr8g1081 | ATGGTGAGAGGAAAGACACAAATGAAGCGTATAGAGAACGCAACAAGTAGACAAGTAACATTCTCAAAGAGAAGAAATGGTTTGTTGAAGAAGGCCTTTGAACTGTCAGTGTTATGTGATGCTGAGGTTGCTCTTATTGTTTTCTCACCAAGAGGGAGGCTTTATGAATTTGCTAGCTCTAGCATTCTAGAAACAATTGAACGATACCGCAGTCATACCAGGATTAATAATACTCCAACAACATCTGAATCAGTTGAAAATACTCAGCAATTGAAGGAAGAAGCAGAAAACATGATGAAGAAGATTGACCTTCTTGAGACTTCAAAACGGAAACTCTTAGGAGAAGGTTTAGGGTCTTGTTCCATTGATGAACTACAAAAGATAGAACAACAGTTGGAGAAAAGCATAAACAAAATTCGAGTCAAAAAGACTAAGGTTTTCAGGGAGCAAATTGATCAGCTAAAAGAAAAGGAAAAAGCCCTAGTTGCTGAAAATGTCAGGCTCTCTGAGAAGTATGGTAACTATTCAACACAGGAATCAACAAAGGATCAGAGAGAAAATATAGCTGAAGCTGAACCTTATGCAGATCAAAGTAGTCCAAGTTCAGATGTGGAGACTGAATTGTTCATTGGTCTTCCAGAAACAAGATCAAGGCGCATTTCTCCAAAGGTGTAG | 675 | 0.3837 | MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASSSILETIERYRSHTRINNTPTTSESVENTQQLKEEAENMMKKIDLLETSKRKLLGEGLGSCSIDELQKIEQQLEKSINKIRVKKTKVFREQIDQLKEKEKALVAENVRLSEKYGNYSTQESTKDQRENIAEAEPYADQSSPSSDVETELFIGLPETRSRRISPKV* | 225 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mtr8g1081 | 224 | CDD | MADS_MEF2_like | 3 | 73 | IPR033896 | GO:0000977|GO:0045944 | |
Mtr8g1081 | 224 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Mtr8g1081 | 224 | Coils | Coil | 85 | 115 | - | - | |
Mtr8g1081 | 224 | Gene3D | - | 14 | 110 | IPR036879 | GO:0003677|GO:0046983 | |
Mtr8g1081 | 224 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Mtr8g1081 | 224 | Coils | Coil | 151 | 171 | - | - | |
Mtr8g1081 | 224 | PANTHER | MADS BOX PROTEIN | 1 | 214 | - | - | |
Mtr8g1081 | 224 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Mtr8g1081 | 224 | PANTHER | MADS-BOX PROTEIN SOC1 | 1 | 214 | - | - | |
Mtr8g1081 | 224 | MobiDBLite | consensus disorder prediction | 174 | 210 | - | - | |
Mtr8g1081 | 224 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Mtr8g1081 | 224 | ProSiteProfiles | K-box domain profile. | 88 | 178 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Mtr8g1081 | 224 | Pfam | K-box region | 86 | 172 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Mtr8g1081 | 224 | Coils | Coil | 122 | 145 | - | - | |
Mtr8g1081 | 224 | SUPERFAMILY | SRF-like | 3 | 88 | IPR036879 | GO:0003677|GO:0046983 | |
Mtr8g1081 | 224 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Mtr8g1081 | 224 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Mtr8g1081 | 224 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Mtr8g1081 | Mtr-Chr8 | 13227391 | 13241957 | Dispersed/Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Mtr8g1081 | 1 | 159 | MADS-box Gene Family | AT2G45660 | 73.292 | 4.80e-80 | 235 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | MADS-MIKC | Mtr8g1081 | K-box | 1.3e-26 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mtr8g1081 | - | - | mtr:MTR_8g033220 | 405.601 |