Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1056 ATGCTCCTTCTCTCACTCAACAAATTTTTGCACTCAGATATTCTTCTATGCATTTTACTCTCTTCTATCATGGAGTCTGACAAGTCCCAGTCAGTGACGCTGAGGAGGTACCATGGTCCAGTAGCCGGTGTGAAAGTGTTGGTTGTGGATGCTAATTCGGCATGCCGAACAATTGTATCAAAAATGCTTATTTCACTTGGATATGAAGTTATGACAGCTTCACTAGCTTCCGATGCATTATCCATTATCTGTGAGAAGAAGAATGAGGTTAACCTTGTGCTTGTGGAGGTTCAGTTGCCAGACATGGAAATATATGAGCTCATCGAGAAAATGGGAGAAAGCTCTAATCTCCCGTCTTTCATTATGACTGCTTATGATGATGACACTCCTTCCATATCACGGGCTCTTGGTTTTGGAGCCAAGTGGTGTTTTAGAAAGCCAGTTCAGATTTCTGATCTACATGACCTTTGGCGATTTGCAGTGTGGAACCGATATGAAACAACAGTCACTGAAGCAGTACCTGACTTCGTGTGGCGTCTGTCAGATGTGATTATGGCAACCAAGGGTCTCGCATGCCAACCATCCATGAATACAGGAGAACGATCTCGCCAAAATGCAATTGGTCTAGAAGGCCAACCATCCTTGAATGCAGGAGAAAAGACTCTCCGAAGTGCAAATGGTAAAGAACATGAATTTCCTGATAATGATAACTCAGTACTCCTGAACAGGAAAAGGAAAAGCTGGACCGATGATTTACATAGGAAATTCTTGGAAGCTGTTGAAATAGCTGGAATCGATGCTGGTTCGAAGACAATATTCCAGATTATGAATGTGGAAGAGTTTACCAAAGAGAGTGCGTCAAACTATTTACAGAGATATCGTCAATCTATGAACCTACGTGCTACTGCAATGGAACAGCATGTGAATGGATATGTGTCTCGGACTAACAAAAGTCAAGGAAAATGCCCTTTAGAAAAACAAGTTTTGATCAACGATCCGAAGGATCTCAGTAATTTTGTGCCTGTGCATATTCTTGACACTTCTGCAACTTTTCTTCCCTTGGAAAGCTCAAGTTGTCAGGAGTCACCTTTCAGTCAAAATCAGCTGTCCCTGCCATTGGAACAGCAAGGTGTTGCGCACACCACATCCAGCCTTGGTAGGTTTATAAACCGTGTTAATGATGATGTATCTGAAAAGATCAGCCAGGTTTTTAATACAGAAGATGGAGAAGTTTCTAATGCAGGACAACAGTTGAATTTTTCAACACCGCTGACCTTTGACATGTGCGAACCATTATGCACGGTGCTACCTATGCCACCACTACCACCAGATGAAAAAGCATACTATGATAAGTTTTTTTATGCAAAAGGAACTCAGCTGTTTACTGATGAGGATTTGAAAATGTGGTTATCAACGATTCGAGGTATGAACATGCCAGTAATGTTTCATTGCGCCTGCGCTCGGGCCGCGAGCACGAGCAATGTGAATGCTGTTGCTTGA 1500 0.4247 MLLLSLNKFLHSDILLCILLSSIMESDKSQSVTLRRYHGPVAGVKVLVVDANSACRTIVSKMLISLGYEVMTASLASDALSIICEKKNEVNLVLVEVQLPDMEIYELIEKMGESSNLPSFIMTAYDDDTPSISRALGFGAKWCFRKPVQISDLHDLWRFAVWNRYETTVTEAVPDFVWRLSDVIMATKGLACQPSMNTGERSRQNAIGLEGQPSLNAGEKTLRSANGKEHEFPDNDNSVLLNRKRKSWTDDLHRKFLEAVEIAGIDAGSKTIFQIMNVEEFTKESASNYLQRYRQSMNLRATAMEQHVNGYVSRTNKSQGKCPLEKQVLINDPKDLSNFVPVHILDTSATFLPLESSSCQESPFSQNQLSLPLEQQGVAHTTSSLGRFINRVNDDVSEKISQVFNTEDGEVSNAGQQLNFSTPLTFDMCEPLCTVLPMPPLPPDEKAYYDKFFYAKGTQLFTDEDLKMWLSTIRGMNMPVMFHCACARAASTSNVNAVA* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1056 499 PANTHER TWO-COMPONENT RESPONSE REGULATOR-LIKE APRR8-RELATED 43 487 - -
Mtr8g1056 499 Gene3D - 44 172 - -
Mtr8g1056 499 SUPERFAMILY Homeodomain-like 241 297 IPR009057 -
Mtr8g1056 499 ProSiteProfiles Response regulatory domain profile. 45 161 IPR001789 GO:0000160
Mtr8g1056 499 PANTHER TWO-COMPONENT RESPONSE REGULATOR 43 487 IPR045279 GO:0009736
Mtr8g1056 499 SMART REC_2 44 157 IPR001789 GO:0000160
Mtr8g1056 499 CDD REC_typeB_ARR-like 46 161 - -
Mtr8g1056 499 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 244 295 IPR006447 GO:0003677
Mtr8g1056 499 Pfam Response regulator receiver domain 46 155 IPR001789 GO:0000160
Mtr8g1056 499 Gene3D - 241 299 - -
Mtr8g1056 499 SUPERFAMILY CheY-like 43 162 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1056 Mtr-Chr8 12983947 12990712 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1056 43 294 Response Regulator Gene Family AT2G25180 28.016 5.40e-24 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Mtr8g1056 Response_reg 1.5e-13 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1056 - - mtr:MTR_8g032710 943.725