Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1054 ATGATGAGTTCAAGTAACAATTTGGTTACTACAATTATTGGATTTGGATTGAGTGCAACTTTCATTGTATTTGTATGTACAAGATTAATTTGTGGAAGATTTAGAGAAAGGCATGTGGGATCACGTACTATATATGAAATGGAATCAAGACCAGATATTGAACGGCCAGAATATCATGGTAATGAACCTGAACCTGCATTTGTTGCTGCAATCCCCACTTTACATTTCAATGAAGAGGCCTTCAATCATCTTCAGTGTACACAGTGTGTGATATGTTTAGGAGAGTACAAAGAAAAAGAAATATTACGCATAATACCTTATTGTGGACACACATTTCATCTTTCATGCATTGATATGTGGCTAAGAAAACAATCAACATGTCCTGTATGTCGTTTGACATTACATAATGTTTGTGAAGAAAAACATGTGAGACCTGTGACATTCACCATAAGACAATCTCTTGATGAGTCTAATAGTACTTCAGAAGGGAATGAGAGACAAGGTGAAGTTAATGCAAGAGAAATAGAATCAAGCTGA 537 0.352 MMSSSNNLVTTIIGFGLSATFIVFVCTRLICGRFRERHVGSRTIYEMESRPDIERPEYHGNEPEPAFVAAIPTLHFNEEAFNHLQCTQCVICLGEYKEKEILRIIPYCGHTFHLSCIDMWLRKQSTCPVCRLTLHNVCEEKHVRPVTFTIRQSLDESNSTSEGNERQGEVNAREIESS* 179
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1054 178 PANTHER OS02G0676500 PROTEIN 1 165 - -
Mtr8g1054 178 CDD RING-H2_EL5_like 88 131 - -
Mtr8g1054 178 PANTHER OS11G0150450 PROTEIN 1 165 - -
Mtr8g1054 178 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 54 137 IPR013083 -
Mtr8g1054 178 SMART ring_2 89 130 IPR001841 -
Mtr8g1054 178 SUPERFAMILY RING/U-box 88 137 - -
Mtr8g1054 178 Pfam Ring finger domain 88 131 IPR001841 -
Mtr8g1054 178 MobiDBLite consensus disorder prediction 154 178 - -
Mtr8g1054 178 ProSiteProfiles Zinc finger RING-type profile. 89 131 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1054 Mtr-Chr8 12975053 12977021 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1054 64 131 Rapid Response to Elicitors AT3G16720 42.647 1.39e-17 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1054 - - cam:101509791 293.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g1054 8 12975053 12977021 Mtr8g1054 8 12975053 12977021 ECH