Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1051 ATGAGAAGATTCATTGGTGTGAGACAAAGGCCATCAGGTAGATGGGTAGCTGAGATCAAAGACTCATCTCAACATGTAAGATTATGGCTTGGAACCTATGACACACCAGAAGAAGCTGCTCGAGCTTACGACGAAGCTGCTCGAGCTTTACGCGGAGAAAATGCTCGAACCAACTTCGCCCTAGCAGTATCAACAGACGGTACAACACCATGCAGTGATGATCAAGGATTAGTATCATCACCACAAACAAATGAAGCAAAAAACAGTTTAACTTTTGCTTCATTGAAAGCAAAATTGAGCAAGAATCTTCAAAGTATTATGGCAAGAACAAGTGATCATAATAACAACAAGTTTTCAAAGAGTAGAGTGAGTGATCATTTTACTTTTGCTAGCATATTCAACCGTAGGAATCATAATTACAATCAAATATCTGCTTTGGATATGAAGAACATAGAGAAAGTTGTGCAGCCTAGTATCATTGTTCCCTCTAATGATGGTGACCCTTCTAGGGTTTCTGATTGTAGCTCTGAATGGTTTGGATTTCAGAATCTAGGGTTAGATTCTGATGGATCTGATATAGGAGAGATTAACAATAATGCTAATATTAATGTTGGTGATCAAGGTTTTTTGGAACAACTCATGGGGTGGATTGATGATGATAGTTCTGATATTTGTGAAGGTTCAAGTAGTAAGAGGTTTAAGGTATCTTCTTCTGTTCTTGTGCCTCCAACTTTCTCTAGTTCTCCTTATGATTGTGGTTCACCTTATAGTGGTTATGCTTCTCCATATAATAGTTGTGGATCCCCTTGTAATGGTTATGCCTCTCCTTATTATGGTAGCAAGAAGTAA 849 0.3828 MRRFIGVRQRPSGRWVAEIKDSSQHVRLWLGTYDTPEEAARAYDEAARALRGENARTNFALAVSTDGTTPCSDDQGLVSSPQTNEAKNSLTFASLKAKLSKNLQSIMARTSDHNNNKFSKSRVSDHFTFASIFNRRNHNYNQISALDMKNIEKVVQPSIIVPSNDGDPSRVSDCSSEWFGFQNLGLDSDGSDIGEINNNANINVGDQGFLEQLMGWIDDDSSDICEGSSSKRFKVSSSVLVPPTFSSSPYDCGSPYSGYASPYNSCGSPCNGYASPYYGSKK* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1051 282 CDD AP2 3 60 IPR001471 GO:0003700|GO:0006355
Mtr8g1051 282 SMART rav1_2 3 66 IPR001471 GO:0003700|GO:0006355
Mtr8g1051 282 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 1 228 - -
Mtr8g1051 282 SUPERFAMILY DNA-binding domain 4 61 IPR016177 GO:0003677
Mtr8g1051 282 ProSiteProfiles AP2/ERF domain profile. 3 60 IPR001471 GO:0003700|GO:0006355
Mtr8g1051 282 Pfam AP2 domain 3 52 IPR001471 GO:0003700|GO:0006355
Mtr8g1051 282 Gene3D AP2/ERF domain 2 62 IPR036955 GO:0003700|GO:0006355
Mtr8g1051 282 PRINTS Ethylene responsive element binding protein signature 4 15 IPR001471 GO:0003700|GO:0006355
Mtr8g1051 282 PRINTS Ethylene responsive element binding protein signature 26 42 IPR001471 GO:0003700|GO:0006355
Mtr8g1051 282 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 1 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1051 Mtr-Chr8 12939108 12939956 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1051 3 60 AP2-EREBP Transcription Factor Family AT5G19790 74.138 3.91e-26 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mtr8g1051 AP2 9.6e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1051 K09286 - gmx:100799444 347.821