Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1050 ATGAAGCCAATTTTTTGTGGAAATCTGGATTTTGACGCAAGACAATCTGATGTTGAGAGGCTGTTCAGAAAATATGGGAAGATTGATAGGGTGGACTTGAAGTCTGGTTTTGCTTTTATCTACATGGAAGACGAACGTGATGCCGAGTATGCAATCAGAAGACTTGATCAAACAGAGTTTGGTAGAAAGGGGCGCCGAATTCGTGTTGAGTGGACTAAGGCAGAACGTGACAACAGAAGGTCTGGTGGCGATTCAAAGAAATCTTCAACTAATACAAAACCATCGAAGACTTTGTTTATTATAAATTTTGATCCTGTTCACACCAGGACAAGGGATTTAGAGAGACACTTTGATCCCTATGGGAAAATATCAAATTTAAGGATCAGAAGGAATTTCGCTTTTATCCAATTTGAAACGCAGGAAGAAGCCACTAAAGCTTTGGAAGCAACTAACCTGAGCAAGTTTATGGACCGTGTTATCACAGTGGAGTATGCTATAAGGGATGATGATGTCAAAAGGGATGGATACAGTCCTGATAGAAGAGGTCGTGGCTCCCCTGATGGTAGGTATGGTCGTGGCTCTCCTGATGGGAGGTATGGTCGTGGCAGATCCCCAAGTCCTTATCGTAGAGGTAGGGGTAGCCCTGATTATGGTCGTGGATCAAATCCTGCTTCCAGACCAGAACCAAGAGGAAGCCCAAAGTATGAACGAGCTGAAAGCCCAGCGAATGGGAGATATGATAGCCGATCTCCCCCACCTCGTGATAGGTCACGATCTTGA 780 0.4436 MKPIFCGNLDFDARQSDVERLFRKYGKIDRVDLKSGFAFIYMEDERDAEYAIRRLDQTEFGRKGRRIRVEWTKAERDNRRSGGDSKKSSTNTKPSKTLFIINFDPVHTRTRDLERHFDPYGKISNLRIRRNFAFIQFETQEEATKALEATNLSKFMDRVITVEYAIRDDDVKRDGYSPDRRGRGSPDGRYGRGSPDGRYGRGRSPSPYRRGRGSPDYGRGSNPASRPEPRGSPKYERAESPANGRYDSRSPPPRDRSRS* 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1050 259 MobiDBLite consensus disorder prediction 230 259 - -
Mtr8g1050 259 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR RS41-LIKE ISOFORM X1 4 259 - -
Mtr8g1050 259 MobiDBLite consensus disorder prediction 171 259 - -
Mtr8g1050 259 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 167 IPR000504 GO:0003723
Mtr8g1050 259 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 63 IPR000504 GO:0003723
Mtr8g1050 259 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 160 IPR000504 GO:0003723
Mtr8g1050 259 SUPERFAMILY RNA-binding domain, RBD 4 169 IPR035979 GO:0003676
Mtr8g1050 259 MobiDBLite consensus disorder prediction 171 187 - -
Mtr8g1050 259 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 74 IPR000504 GO:0003723
Mtr8g1050 259 Gene3D - 1 86 IPR012677 -
Mtr8g1050 259 Gene3D - 87 175 IPR012677 -
Mtr8g1050 259 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 4 259 - -
Mtr8g1050 259 SMART rrm1_1 97 163 IPR000504 GO:0003723
Mtr8g1050 259 SMART rrm1_1 3 70 IPR000504 GO:0003723
Mtr8g1050 259 MobiDBLite consensus disorder prediction 74 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1050 Mtr-Chr8 12924856 12929202 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1050 4 170 Eukaryotic Initiation Factors Gene Family AT1G49760 23.497 2.21e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1050 K12893 - gmx:100797778 392.889
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g1050 8 12924856 12929202 Mtr8g1050 8 12924856 12929202 ECH