Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mtr8g1050 | ATGAAGCCAATTTTTTGTGGAAATCTGGATTTTGACGCAAGACAATCTGATGTTGAGAGGCTGTTCAGAAAATATGGGAAGATTGATAGGGTGGACTTGAAGTCTGGTTTTGCTTTTATCTACATGGAAGACGAACGTGATGCCGAGTATGCAATCAGAAGACTTGATCAAACAGAGTTTGGTAGAAAGGGGCGCCGAATTCGTGTTGAGTGGACTAAGGCAGAACGTGACAACAGAAGGTCTGGTGGCGATTCAAAGAAATCTTCAACTAATACAAAACCATCGAAGACTTTGTTTATTATAAATTTTGATCCTGTTCACACCAGGACAAGGGATTTAGAGAGACACTTTGATCCCTATGGGAAAATATCAAATTTAAGGATCAGAAGGAATTTCGCTTTTATCCAATTTGAAACGCAGGAAGAAGCCACTAAAGCTTTGGAAGCAACTAACCTGAGCAAGTTTATGGACCGTGTTATCACAGTGGAGTATGCTATAAGGGATGATGATGTCAAAAGGGATGGATACAGTCCTGATAGAAGAGGTCGTGGCTCCCCTGATGGTAGGTATGGTCGTGGCTCTCCTGATGGGAGGTATGGTCGTGGCAGATCCCCAAGTCCTTATCGTAGAGGTAGGGGTAGCCCTGATTATGGTCGTGGATCAAATCCTGCTTCCAGACCAGAACCAAGAGGAAGCCCAAAGTATGAACGAGCTGAAAGCCCAGCGAATGGGAGATATGATAGCCGATCTCCCCCACCTCGTGATAGGTCACGATCTTGA | 780 | 0.4436 | MKPIFCGNLDFDARQSDVERLFRKYGKIDRVDLKSGFAFIYMEDERDAEYAIRRLDQTEFGRKGRRIRVEWTKAERDNRRSGGDSKKSSTNTKPSKTLFIINFDPVHTRTRDLERHFDPYGKISNLRIRRNFAFIQFETQEEATKALEATNLSKFMDRVITVEYAIRDDDVKRDGYSPDRRGRGSPDGRYGRGSPDGRYGRGRSPSPYRRGRGSPDYGRGSNPASRPEPRGSPKYERAESPANGRYDSRSPPPRDRSRS* | 260 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mtr8g1050 | 259 | MobiDBLite | consensus disorder prediction | 230 | 259 | - | - | |
Mtr8g1050 | 259 | PANTHER | SERINE/ARGININE-RICH SPLICING FACTOR RS41-LIKE ISOFORM X1 | 4 | 259 | - | - | |
Mtr8g1050 | 259 | MobiDBLite | consensus disorder prediction | 171 | 259 | - | - | |
Mtr8g1050 | 259 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 96 | 167 | IPR000504 | GO:0003723 | |
Mtr8g1050 | 259 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 4 | 63 | IPR000504 | GO:0003723 | |
Mtr8g1050 | 259 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 98 | 160 | IPR000504 | GO:0003723 | |
Mtr8g1050 | 259 | SUPERFAMILY | RNA-binding domain, RBD | 4 | 169 | IPR035979 | GO:0003676 | |
Mtr8g1050 | 259 | MobiDBLite | consensus disorder prediction | 171 | 187 | - | - | |
Mtr8g1050 | 259 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 2 | 74 | IPR000504 | GO:0003723 | |
Mtr8g1050 | 259 | Gene3D | - | 1 | 86 | IPR012677 | - | |
Mtr8g1050 | 259 | Gene3D | - | 87 | 175 | IPR012677 | - | |
Mtr8g1050 | 259 | PANTHER | SERINE/ARGININE RICH SPLICING FACTOR | 4 | 259 | - | - | |
Mtr8g1050 | 259 | SMART | rrm1_1 | 97 | 163 | IPR000504 | GO:0003723 | |
Mtr8g1050 | 259 | SMART | rrm1_1 | 3 | 70 | IPR000504 | GO:0003723 | |
Mtr8g1050 | 259 | MobiDBLite | consensus disorder prediction | 74 | 93 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Mtr8g1050 | Mtr-Chr8 | 12924856 | 12929202 | Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Mtr8g1050 | 4 | 170 | Eukaryotic Initiation Factors Gene Family | AT1G49760 | 23.497 | 2.21e-09 | 55.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mtr8g1050 | K12893 | - | gmx:100797778 | 392.889 |