Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1049 ATGGTGGAAGATAGTACAGTTGCTGTCACAGTGGATACATGCTCAACAGAAGAATGGTTGTTGAACTCACAAGAACTTGTTCCTATTGCTCTTACAAAAGCAAGAGAGGTAAAAGGATTTCAAGGTAGGTGGAAAATGATCATTTCAAAATTGGAACAAGTTCCATCAAAGCTATCAGATTTATCAAGCCACCCTTGTTTTTCAAAGAATGCACTTTGCAAGGAACAATTGCAGGCTGTGTCAAAGACACTAAGAGAAGGTATTGAATTAGCTGAGTTATGTTTGAAAGAAAAGTATGAAGGAAAACTAAGAATGCAAAGTGATCTTGATGCATTAATTGGTAAGCTTGATTTGAATTTAAAGGATTGTAGCTTGTTAACAAAAACTGGTGTACTTGGTGAAGTTACTTTGCAATTCAATGTTTCTGGTTCTATAACAGAATCAGATATTGAAACACATTGCAATATAAAGGAGCTACTCGCGCGCCTTCAAATCGGTCATTTGGAATCGAAACACAAAGCTTTGGATAGACTTCATGATATTATGAGAGAAGATGAGAAGAATGTTTTGGCTGTTTTTTGCAGGAGCAATGTTGTTGCTTTGGTTCAGTTGCTTACAGCAACATCAACAAGGATAAGGGAGAAAACAGTTAGTATTATATGCTCTCTCGTTGAATCCGGTGGTAGCTGCGAAAGTTGGTTAGTTGCTGAAGGTGTTTTGCCACCACTTATAAGGCTTGTTGAATCAGGTAGTGCTGTTAGTAAAGAAAAGGCTATTGTATCTCTTCAAAGGTTGTCTATGACGGAAGACACAACTCGTGCAATCGTCGGACATGGAGGGGTTCGTCCGTTAGTCGAGCTTTGTCAGATTGGTGATTCTGTTTCACAATCTGCAGCTGCTTGTACTTTGAAGAACATTTCGGCTGTTCCGGAAGTGAGACAGGTTTTGGATGAAGAAGGTGTTGTTAAGGTTATGATCAATCTTCTTAACAATGGAATGTTGTTAGGAACTAAAGAGTATGCTGCTGAGTGTTTGCAGAATCTGACTGCTAGCAATGAGAATCTGAGAAGGTCTGTTATATCAGAAGGCGGCGTTCGGAGCATTCTGGCTTATCTTGATGGTCCACTTCCTCAAGAATCCGCTGTTGGTGCATTGAGGAATCTCGTTGCATCGGTTTCCGAGGAAACTCTGGTTTCTCTTGGATTGCTTCCTTGTTTAGTTCATGTTTTGAAGTCAGGATCGTTAGGTGCGAAACAATGCGCTGCATCAGTTATATGCAGGATTTGTAGCTCAATTGAGATGAAGAAAATGTTAGGTGAAGTTGGTTGCATTCCTCTATTGATCAACATGCTTGAGGCTAAAGCAAACACTGCTAGAGAACTTGCAGCACAAGCAATTGCCAGTTTGATGATTTTGTCTCAGAATCGGCGAGAGGTTAAAAAGGATGATAAAAGCGTGCCGAATTTGGTTCAATTGCTTGATCCTAGTCCACAAAACACTGCGAAAAAATACGCAGTTTGTTGCCTTGGATCACTTTCTTCTTGTAAGAAATGTAAGCGGTTGATGATATCATATGGAGCAATAGGGTATTTGAAGAAGCTTATTGACATAGAGATTCCAGGAGCTAAAAAGTTGCGTGAAAGATTGGAAAGAGGGAAATTGAGAAGTTTGTTTAGCAGAAAATAA 1686 0.3956 MVEDSTVAVTVDTCSTEEWLLNSQELVPIALTKAREVKGFQGRWKMIISKLEQVPSKLSDLSSHPCFSKNALCKEQLQAVSKTLREGIELAELCLKEKYEGKLRMQSDLDALIGKLDLNLKDCSLLTKTGVLGEVTLQFNVSGSITESDIETHCNIKELLARLQIGHLESKHKALDRLHDIMREDEKNVLAVFCRSNVVALVQLLTATSTRIREKTVSIICSLVESGGSCESWLVAEGVLPPLIRLVESGSAVSKEKAIVSLQRLSMTEDTTRAIVGHGGVRPLVELCQIGDSVSQSAAACTLKNISAVPEVRQVLDEEGVVKVMINLLNNGMLLGTKEYAAECLQNLTASNENLRRSVISEGGVRSILAYLDGPLPQESAVGALRNLVASVSEETLVSLGLLPCLVHVLKSGSLGAKQCAASVICRICSSIEMKKMLGEVGCIPLLINMLEAKANTARELAAQAIASLMILSQNRREVKKDDKSVPNLVQLLDPSPQNTAKKYAVCCLGSLSSCKKCKRLMISYGAIGYLKKLIDIEIPGAKKLRERLERGKLRSLFSRK* 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1049 561 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 238 280 IPR000225 GO:0005515
Mtr8g1049 561 SUPERFAMILY ARM repeat 152 538 IPR016024 -
Mtr8g1049 561 Pfam Armadillo/beta-catenin-like repeat 271 308 IPR000225 GO:0005515
Mtr8g1049 561 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 320 364 IPR000225 GO:0005515
Mtr8g1049 561 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 561 - -
Mtr8g1049 561 PANTHER ARMADILLO/BETA-CATENIN-LIKE REPEAT PROTEIN 1 561 - -
Mtr8g1049 561 Gene3D - 143 394 IPR011989 -
Mtr8g1049 561 Gene3D - 395 538 IPR011989 -
Mtr8g1049 561 SMART arm_5 309 350 IPR000225 GO:0005515
Mtr8g1049 561 SMART arm_5 472 514 IPR000225 GO:0005515
Mtr8g1049 561 SMART arm_5 391 430 IPR000225 GO:0005515
Mtr8g1049 561 SMART arm_5 268 308 IPR000225 GO:0005515
Mtr8g1049 561 SMART arm_5 431 471 IPR000225 GO:0005515
Mtr8g1049 561 SMART arm_5 185 225 IPR000225 GO:0005515
Mtr8g1049 561 SMART arm_5 351 390 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1049 Mtr-Chr8 12914907 12918901 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1049 206 480 U-box Gene Family AT3G54790 28.571 1.06e-18 88.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1049 - - gmx:100809488 886.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g1049 8 12914907 12918901 Mtr8g1049 8 12914907 12918901 ECH