Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1027 ATGAGTTTTGGGGGGTTTGTAGAGAACAATTCAGGAGGTGGTGGAGGTGTAAGAAACATAGGAGAAATTTCTTACAACAACGAAAGAATGCCATTTGGTTCTTTCTCTCAACCTCGTCTTGTTACTTCTCCAGCTTTGGCTAAATCAATGTTCAACTCACCTGGATTATCACTTGCACTTCAAACTAATATTGATGGACAAGAAGATGTGAATGGATCAATGCATGGGAATTATGAGCAAAATGGTTTGAGAAGAAGTAGAGAAGAGGAACAAAGTAGATCTGGTAGTGATAACTTGGATGGTGTTTCTGGTGATGAACAAGATGCTGATGATAAGCCTCCTAGGAAGAAGAGATATCACCGACACACTCCTCAACAGATTCAAGAGCTTGAAAGTTTGTTTAAGGAGTGTCCTCACCCAGATGAGAAACAAAGATTGGAACTTAGCAAAAGGCTTTGTTTGGAAACAAGACAAGTTAAGTTTTGGTTCCAAAATCGAAGAACACAAATGAAGACTCAATTGGAAAGGCATGAGAACAATTTGCTTAGGCAAGAGAATGATAAGCTTAGAGCTGAGAATATGTCTATAAGGGATGCAATGAGGAATCCTATTTGTTCCAATTGTGGTGGTCCAGCTATGATCGGCGAGATTTCACTCGAGGAACAACACCTTCGAATCGATAATGCGAGGTTGAAAGACGAGCTAGACCGAGTTTGTGCACTTGCTGGAAAGTTTCTAGGCCGTCCGATTTCTTCGTTACCAAATTCAAGTTTAGAGCTTGGTGTTGGAGGAAACAACAACAATGGTTTTAATGTGATGAACAATGTGCCTTCAACATTACCTGATTTTAGTTCAGGAATGTCTAATAACCCTTTAGCCATTGTGTCTCCTTCAAATAGACAAACATCTATGGTGACTACTGGCTTTGATAGATCGGTTGAAAGGTCTATGTTTCTTGAACTTGCTTTGGCTGCTATGGATGAGTTGGTTAAGATGGCACAAACTAGTGACCCTCTTTGGATTAGGAGTATAGAAGGAGGAAGGGAAATTTTGAACCATGAGGAATATATGAGAACATTCACTCCTTGCATTGGTTTGAAACCTAATGGTTTTGTTTCTGAGGCCTCAAGGGAAACTGGTACTGTCATCATCAATAGCTTGGCCCTTGTTGAAACTCTTATGGACTCGAATCGTTGGATAGAGATGTTTCCTTGTATCATTGCAAGAACCTCCACAAATGAAGTGATATCTAATGGAATAAATGGAACAAGAAATGGTGCACTTCAACTAATGCAAGCTGAACTTCATGTGCTATCGCCTTTGGTTCCGGTTCGCGAGGTAAATTTCCTTAGGTTTTGCAAGCAGCATGCAGAAGGTGTTTGGGCTGTGGTTGACGTGTCTATAGATACCATCAGAGAAACTTCTGGTGCTACAAGTTTTGTGAACTGTAGGAAGCTTCCCTCTGGTTGTGTTGTGCAAGATATGCCAAATGGTTACTCCAAGGTGACATGGGTGGAACATACAGAATATGAGGAAAATCAAGTCCACCAGCTGTATAGACCTCTGTTGAGCTCAGGTATGGGGTTTGGTGCGTCTCGCTGGGTCGCTACCCTACAACGCCAGTGCGAGTGCCTTGCCATATTAATGTCCTCTGCCGCTCCCTCTCGAGACCACTCCGCAATAACAGCAGGAGGAAGGCGAAGCATGCTGAAGCTTGCACAACGAATGACTAACAACTTCTGTGCCGGTGTCTGTGCCTCCACGGTCCACAAATGGAACAAACTTAACCCTGGTAATGTTGACGAAGATGTGAGGGTGATGACACGAAAGAGCGTCGATGATCCTGGTGAGCCACCAGGGATCGTGTTGAGCGCAGCCACGTCAGTATGGCTCCCGGTTTCACCTCAAAGACTGTTCGATTTTCTGCGCGACGAAAGGCTCCGTAGTGAATGGGATATACTGTCTAATGGTGGTCCTATGCAAGAGATGGCTCATATTGCTAAAGGACAAGATCATGGCAACTGTGTTTCTCTTCTCCGTGCTAGTGCAATGAATTCTAACCAGAGTAGCATGTTGATACTACAAGAAACATGTATAGACGAAGCGGGGTCGCTTGTTGTCTATGCGCCGGTCGATATTCCAGCTATGCATGTTGTCATGAATGGTGGCGATTCAGCTTATGTTGCATTACTACCCTCCGGCTTTGCCATCGTCCCTGATGGTCCTGGGTCACGTGGACTAGAGAATGGCGATGCGACCGCAAATGGAGGTGGCGAGGCGCGTGTAAGTGGGTCCCTTTTAACGGTGGCGTTTCAAATCCTTGTGAATAGTCTTCCTACAGCAAAACTCACCGTGGAGTCAGTTGAAACAGTGAACAATCTCATTTCATGCACTGTTCAGAAAATCAAAGCAGCACTTCAATGTGAAAGCTGA 2433 0.4406 MSFGGFVENNSGGGGGVRNIGEISYNNERMPFGSFSQPRLVTSPALAKSMFNSPGLSLALQTNIDGQEDVNGSMHGNYEQNGLRRSREEEQSRSGSDNLDGVSGDEQDADDKPPRKKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMKTQLERHENNLLRQENDKLRAENMSIRDAMRNPICSNCGGPAMIGEISLEEQHLRIDNARLKDELDRVCALAGKFLGRPISSLPNSSLELGVGGNNNNGFNVMNNVPSTLPDFSSGMSNNPLAIVSPSNRQTSMVTTGFDRSVERSMFLELALAAMDELVKMAQTSDPLWIRSIEGGREILNHEEYMRTFTPCIGLKPNGFVSEASRETGTVIINSLALVETLMDSNRWIEMFPCIIARTSTNEVISNGINGTRNGALQLMQAELHVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGATSFVNCRKLPSGCVVQDMPNGYSKVTWVEHTEYEENQVHQLYRPLLSSGMGFGASRWVATLQRQCECLAILMSSAAPSRDHSAITAGGRRSMLKLAQRMTNNFCAGVCASTVHKWNKLNPGNVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAMNSNQSSMLILQETCIDEAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGPGSRGLENGDATANGGGEARVSGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCES* 811
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1027 810 SUPERFAMILY Bet v1-like 572 803 - -
Mtr8g1027 810 CDD homeodomain 115 173 IPR001356 GO:0003677
Mtr8g1027 810 MobiDBLite consensus disorder prediction 81 95 - -
Mtr8g1027 810 Gene3D - 102 189 - -
Mtr8g1027 810 ProSiteProfiles 'Homeobox' domain profile. 113 173 IPR001356 GO:0003677
Mtr8g1027 810 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 64 807 IPR042160 -
Mtr8g1027 810 ProSiteProfiles START domain profile. 311 547 IPR002913 GO:0008289
Mtr8g1027 810 SMART START_1 320 544 IPR002913 GO:0008289
Mtr8g1027 810 SUPERFAMILY Homeodomain-like 101 173 IPR009057 -
Mtr8g1027 810 SMART HOX_1 114 177 IPR001356 GO:0003677
Mtr8g1027 810 Pfam START domain 320 544 IPR002913 GO:0008289
Mtr8g1027 810 Gene3D - 406 542 IPR023393 -
Mtr8g1027 810 MobiDBLite consensus disorder prediction 67 123 - -
Mtr8g1027 810 Coils Coil 167 199 - -
Mtr8g1027 810 Pfam Homeodomain 116 171 IPR001356 GO:0003677
Mtr8g1027 810 SUPERFAMILY Bet v1-like 313 544 - -
Mtr8g1027 810 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG1 64 807 - -
Mtr8g1027 810 CDD START_ArGLABRA2_like 315 543 - -
Mtr8g1027 810 ProSitePatterns 'Homeobox' domain signature. 148 171 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1027 Mtr-Chr8 12414014 12420721 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1027 1 810 Homeobox Transcription Factor Family AT3G61150 65.542 0.0 1047
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Mtr8g1027 START 8.1e-56 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1027 K09338 - gmx:100811873 1328.92
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g1027 8 12414014 12420721 Mtr8g1027 8 12414014 12420721 ECH
Mtr8g1027 8 12414014 12420721 Mtr7g1921 7 35294585 35301916 ECH