Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1008 ATGGCTTCTTCTTCTTCTTCTTCTTCTCCTTTCAAAAAACACGATGTTTTTATCAGTTTTAGAGGGGAGGATACTCGCACCAATTTTACAAGCTTTCTTCATGCGGCTTTGTGTAAAAACCACATCGAAACCTACATAGACTATAGAATCGAAAAAGGAGAAGAGGTTTGGGAAGAACTAGAAAAAGCAATTAAAGCATCCGCTTTATTTTTGGTTGTGTTCTCAGAAAACTATGCATCTTCAACATGGTGTTTGAATGAACTCGTTGAAATAATGAAGTGCAAAAAAAATGACGAAGACAACGTTGTTGTTATTCCTGTGTTCTACCGTATAGAAGCTTCACATGTCCGAAAGCAGACAGGAAGTTACCACACAGCGTTGTTGAAACAAAAGAAACAAGGCAAAGATAAGATTCAAAGGTGGAAGATTGCTCTCTTTGAAGTAGCTAATTTATCTGGCTTTGATTCAAGTACATATAGGTATTTTCTTTGCTTCTACTTTTACAAATTGACTGAAGCTGACTTGATTGGAGACATCATCAAAGCAGTCCTCCAAAAATTGAATCAAAAGTATACAAATGAACTTAGATGCTTGTTCATACCAGATGAAAACTATTCAAGCATTGAATCATTATTAAAAGTAGATTCAAGAGAAGTTAGAACTATTGGAATTTGGGGCATGGGAGGCATAGGAAAGACAACCCTTGCTGCTGCCATATTTCAGAAGGTATCTTCCATGTATGAAGGTAGTTGCTTCCTAGAAAATGTCACAGAAGAATCAAAGAGACATGGGTTCAGTTACACATACAACAGACTTCTTTCTAAGTTACTAGGGGAAGATCTTCATATTGAGACTCCTAAAGTAATATCATCTATGGTTATGAAAAGACTCAAACGCATGAAAGCTTTCATTGTACTAGATGATGTTCGTACTTTAGAACTTCTAGATAATATGATTGGAGCAGGGCATGATTGCCTTGGAGCTGGTAGCAGAGTCATTGTGACAACCAGAGATAAGCATGTATTGATAGGTGGAGGAATTGTCGATATTCATCAAGTTAAGGAAATGAACTCTCCAAATTCCATCAGGTTGTTCAGTTTGAATGCTTTCAAAAAAATCCTTCCCAATGAGGGATATGAGGAGATATCAAACAATGTAGTTTCTTACGCCAAAGGCAACCCTTTGGCCTTGAAAGTTCTGGGTTCATTTCTTCTTACAAAAAGTAAAAAAGAATGGGACAGCGCTCTAAATAAACTGAAGGAAATTCCCAATGCTGAAATTCAAAAGGTGTTGAGATTAAGCTATGATGAATTAGATGATACAGAGAAAGATATATTTCTAGACATTGCATGTTTTTTCAAAGGTTGTGGAAGCAAAAGCAGAGTAACAAAAATATTAAATGCGTGTGGTTTATTTGCAGATATTGGGATAAGAAACCTTTTAGACAAGGCTCTTGTAACTATTACTTCAGCCAATGGCATACAGATGCATGATTTGATACGAGAGATGGGTAGGCAAATTGTTCGTGAAGAATCTATCAAAAACCCTGGACAACGCAGTAGATTGTGGAATGCTGAAGAAATTTGTGATGTGTTGACAAACAATAATGTAAGAATGATATATACCTTGACTTGCATTCCAAAAAACATGTATATATATGGGACTGGTGCAGTTGAAAGCATATGCTTGGATATGAATCAAATTACCTGCATAAATTTGTGCTCTAAAGCATTCAGAAAGATGCCAAACCTAAGATTACTTGCTTTCGTAGACCGAAATCTAGATGCTAAGGGAATTATTTCTGTGCATCTTCCCGAGGGCCTTGATTTTTTGCCTAACAACTTGAGAAGTTTTGAATGGAGTGCATATCCAATAAATTCTCTACCATCAAATTTTTCTCCATGGAAGCTTGTTGAACTTTGTCTTCCATATAGCAACCTGGAAAAACTTTGGAACGGAGCACAGAATTTTCCGAGCTTAGAGAGAATAGACCTTCGTGATTCGGCATGCTTGATAGAGTGTCCAAATTTTTCCAATGCCCCAAATCTCAAGCATATAATGCTTGACAATTGTGTAAGCATGTCTCATGTTTACCCATCTATTTTCAATCTCCCAAAGCTTGAAGAGTTCGCTGTGACTCAATGTAAGTCACTTAAGAGCCTCTGTGGCATCACTCGTTCACAATCTCTCCATACACTTTGGGCAGGTGGATGTTACAATCTCCAAGAGTTCATAACAATATCCCAAAACACTAATGATCCTTCCACAACCACAACTGGGTTCACATCATCAACTAATCTTGAATATTTTACTTTTCACATATGTGAGGGTCTTTTGGATCTCCCTGAAAACTTTGCAAACCATATGACACTTTCTGACTCAAAGATGAATGAGCAAGACAATTTAACGACCTTCCATAAAATACTACCTAGCCCTTGCTTCAGGACTGTTAGAAGTTTAATTTTCAATGCTATTCGCAATTTATCTGTAATCCCAGACAGCATCTCCTTGCTATCATCATTGGAGAATTTAACACTATCTGGCTGTGCTATCATAAGCTTACCTGAAAGCATTAATTGTCTTCCAAGACTCATGTTTCTTGACATTGATAAATGTGAAATGCTTCAATCTATACCTTCTCTTCCACAATCCATTCAGTGGTTCCATGTTCGGAATTGTGAATCTCTTCAGAATGTGTTGAATTCAACAAATGAACAAACCAAAAAACACCAAAATAAGTGTACTTTTCTCCTCCCTAACTGCATCAAATTGGATCAACATTCATTTGTTTCCGTTTTGAAAGATGCCATTGTAAGGATTGAACTTGGAGCAAAACCACTACTACCAGCAGATGTATTAGAAACCAATGAAAAAGCATCTTCAGATGATGGCTGGATCAACATCTTTATTGGTGACAGTTTAATAAAAGGTAAGAATTGCTACATGTTACCAGCTGGAAATTTTAAAAATGGAGACTGGTTCCATTACCATTCTACACAAACTTTGGTGTCTATTGAACTTCCCCCTAGGGATCATTTGGGTTTCATTTTCTACTTGGTTCTTTCTCAAAATCAATCATGTCGCATTCGAAACCTTGGATGCAAATGCTATATAGAAACCACTTGCGGTGATTTTATTAGTATAAAAAGTTTCTTTAGAGATGAAAGTGTTGTGTTTTATCCTTACTCTTCATTTGACACATTGTCGGATCATTTGTTTTTATGGTACGATATACAATGTTGTGAGCAAATAATGGAAGCAATCAAAGAAATAAAAGCCAATGACATGAGTGCCATTCACAATTCAAAGCTTACATTTAAATTCTTCGCTCGTACTGAAGAAAATATGGAAGCAGTGATAAAAGAGTGTGGTTTTCGATGGATATATTCCTCAGAAGGTCAAGTTGTCGAGGAAGAAGAAGGATGTGAATCTGAGACAAGTAAGGAAACTCACACAGTGGAGGGTTCTAAATCTGATGAGCAAGAAGAAACAGTTCCAGCAGCAATGAATTTTCAGCAAAGTGTCTATGGAACTCCCAATCTGGAAGCAGTAGAAACAAAAGACTTAAGGAGTGTACTTGAAGAACTCTTGCATATTGGATTTGGCGGAGACCTCATGTTATAA 3624 0.3675 MASSSSSSSPFKKHDVFISFRGEDTRTNFTSFLHAALCKNHIETYIDYRIEKGEEVWEELEKAIKASALFLVVFSENYASSTWCLNELVEIMKCKKNDEDNVVVIPVFYRIEASHVRKQTGSYHTALLKQKKQGKDKIQRWKIALFEVANLSGFDSSTYRYFLCFYFYKLTEADLIGDIIKAVLQKLNQKYTNELRCLFIPDENYSSIESLLKVDSREVRTIGIWGMGGIGKTTLAAAIFQKVSSMYEGSCFLENVTEESKRHGFSYTYNRLLSKLLGEDLHIETPKVISSMVMKRLKRMKAFIVLDDVRTLELLDNMIGAGHDCLGAGSRVIVTTRDKHVLIGGGIVDIHQVKEMNSPNSIRLFSLNAFKKILPNEGYEEISNNVVSYAKGNPLALKVLGSFLLTKSKKEWDSALNKLKEIPNAEIQKVLRLSYDELDDTEKDIFLDIACFFKGCGSKSRVTKILNACGLFADIGIRNLLDKALVTITSANGIQMHDLIREMGRQIVREESIKNPGQRSRLWNAEEICDVLTNNNVRMIYTLTCIPKNMYIYGTGAVESICLDMNQITCINLCSKAFRKMPNLRLLAFVDRNLDAKGIISVHLPEGLDFLPNNLRSFEWSAYPINSLPSNFSPWKLVELCLPYSNLEKLWNGAQNFPSLERIDLRDSACLIECPNFSNAPNLKHIMLDNCVSMSHVYPSIFNLPKLEEFAVTQCKSLKSLCGITRSQSLHTLWAGGCYNLQEFITISQNTNDPSTTTTGFTSSTNLEYFTFHICEGLLDLPENFANHMTLSDSKMNEQDNLTTFHKILPSPCFRTVRSLIFNAIRNLSVIPDSISLLSSLENLTLSGCAIISLPESINCLPRLMFLDIDKCEMLQSIPSLPQSIQWFHVRNCESLQNVLNSTNEQTKKHQNKCTFLLPNCIKLDQHSFVSVLKDAIVRIELGAKPLLPADVLETNEKASSDDGWINIFIGDSLIKGKNCYMLPAGNFKNGDWFHYHSTQTLVSIELPPRDHLGFIFYLVLSQNQSCRIRNLGCKCYIETTCGDFISIKSFFRDESVVFYPYSSFDTLSDHLFLWYDIQCCEQIMEAIKEIKANDMSAIHNSKLTFKFFARTEENMEAVIKECGFRWIYSSEGQVVEEEEGCESETSKETHTVEGSKSDEQEETVPAAMNFQQSVYGTPNLEAVETKDLRSVLEELLHIGFGGDLML* 1208
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1008 1207 MobiDBLite consensus disorder prediction 1138 1164 - -
Mtr8g1008 1207 Gene3D - 356 439 IPR042197 -
Mtr8g1008 1207 Pfam Leucine Rich Repeat 636 655 IPR011713 -
Mtr8g1008 1207 Gene3D - 192 344 IPR027417 -
Mtr8g1008 1207 SUPERFAMILY L domain-like 562 902 - -
Mtr8g1008 1207 Pfam TIR domain 13 193 IPR000157 GO:0007165
Mtr8g1008 1207 Gene3D Ribonuclease Inhibitor 752 923 IPR032675 -
Mtr8g1008 1207 Gene3D Ribonuclease Inhibitor 530 751 IPR032675 -
Mtr8g1008 1207 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 9 855 IPR044974 GO:0006952
Mtr8g1008 1207 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 815 908 IPR044974 GO:0006952
Mtr8g1008 1207 MobiDBLite consensus disorder prediction 1144 1161 - -
Mtr8g1008 1207 Pfam NB-ARC domain 208 438 IPR002182 GO:0043531
Mtr8g1008 1207 SUPERFAMILY "Winged helix" DNA-binding domain 426 532 IPR036390 -
Mtr8g1008 1207 SUPERFAMILY Toll/Interleukin receptor TIR domain 3 154 IPR035897 -
Mtr8g1008 1207 Gene3D - 11 191 IPR035897 -
Mtr8g1008 1207 PRINTS Disease resistance protein signature 221 236 - -
Mtr8g1008 1207 PRINTS Disease resistance protein signature 296 310 - -
Mtr8g1008 1207 PRINTS Disease resistance protein signature 390 404 - -
Mtr8g1008 1207 PRINTS Disease resistance protein signature 836 852 - -
Mtr8g1008 1207 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 815 908 - -
Mtr8g1008 1207 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 9 855 - -
Mtr8g1008 1207 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 196 449 IPR027417 -
Mtr8g1008 1207 Coils Coil 893 913 - -
Mtr8g1008 1207 ProSiteProfiles TIR domain profile. 12 187 IPR000157 GO:0007165
Mtr8g1008 1207 Pfam C-JID domain 992 1132 IPR045344 -
Mtr8g1008 1207 SMART till_3 13 151 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1008 Mtr-Chr8 12256472 12261697 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1008 9 888 WRKY Transcription Factor Family AT4G12020 30.527 1.08e-98 345
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1008 - - mtr:MTR_8g433020 1870.13