Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1006 ATGGCTATGGCTTCTTCTTCTTCATCTTCTCCTCTCAAAAAACACGATGTTTTTATCAGTTTTAGAGGGGAAGACACTCGCGCCAATTTTACAAGCTTTCTTCATGCGGCTTTGTGTAGAAACCACATCGAAACCTACATAGACTATAGGATCGAAAAAGGAAAAGAGGTTTGGGAAGAACTTGAAAAAGCAATTAAAGCATCCGCTTTATTTTTGGTTGTGTTCTCAGAAAACTATGCATCTTCAACATGGTGTTTGAATGAACTCGTTGAAATAATGTAGTGCAAGAAATATGACAAAGACAACGTTGTTGTTATTCCTGTGTTCTACCGTATAGAACCTTCACATGTCCGAAAGCAGACAGGGAGTTACCACACGGCGTTGGCGAAACAAAAGAAACAAGGCAAAGATAAGATTCAAAAGTGGAAGAATGCTCTCTTTGAAGTAGCTAATTTATCTGGCTTCGATTCAAGTACATATAGGACTGAATCTGTCTTGATTGAAGACATCATCAAAGCTGTTTTACAAATATTGAATCAAAAGTATAGAAATGAACTTAGATGTTTGTTCATACCAGATGAAAACTATTCAAGCATTGAATCATTATTAAAAGTTGATTCAAGAGAAGTTAGAACTATTGGAATTTGGGGCATGGGAGGCATTGGAAAGACAACCCTTGCTGCTGCCATATTTCAGAAGGTATCTTCCATGTATGAAGGTAGTTGCTTCCTAGAAAATGTCACAGAAGAATCAAAGAGACATGGGCTCAGTTACACATACAACAGACTTCTTTCTAAGTTACTAGGGGAAGATCTTCATATTGAGACTCCTAAAGTAATATCATCTATGGTTATGAAAAGACTCAAACGCATGAAAGCTTTCATTGTACTAGATGATGTTCGTACTTTAGAACTTCTAGATAATTTGATTGGAGCAGGGCATGATTGCCTTGGAGTTGGTAGCAGAGTCATTGTGACAACCAGAGATAAGCATGTGTTGACAGGAGGAGGAATTGACGAAATTCATCAAGTTAAGGAAATGAACTCTCAAAACTCCATCAGGTTGTTCAGTTTGAATGCTTTCAAAAAAATCCTTCCCAATGAGGGATATGAAGAGATATCAAACAATGTAGTTTCTTATACAAAAGGCAACCCTTTGGCTTTGAAAGTTCTGGGTTCATTTCTTCGTACAAAAAGTAAAAAAGAATGGAATAGTGCTTTAAACAAACTGAAGGAAATTCCCAATGCTGAAATTCAAAAGGTGTTGAGGTTAAGCTATGATGAATTAGATGATACAGAGAAAAATATATTTCTAGACGTTGCATGTTTTTTCAAAGGATTTGGAAGCAGCAGCAGTGTAACAAAAATATTAAATGCATGTGGTTTTTTTGCAGATATTGGGATAAGAAACCTATTAGACAAGGCTCTTGTAACAATTACTTCAGAAAATTTCATAAAGATGCATGACTTGATAAAACAAATGGGTAGGGAAATTGTTCGTGAAGAATCTATCAAAAACCCTAGACAACGCAGTAGGTTGTGGAATGCTGACGAAATTTGTGATGTGCTGACAGACAATAATGTAATAATGATATATACCTTGACTTGCATTGCAAAAAACATGTATATATATAGGGTTTTGCTAGAAGACACCTTTTATGAAGGTGTGTTTACACCTTCATGGGTGTCTTACAGCAAAACTCATATATATATATATATGATTCTAATTTTCATTTATCAGGGGACTACTGCAGTTGAAAGCATATGCTTAGATATGGATCAAACTACCTGCATAAATTTGAACTCTAACGCATTCACAAAGATGCCAAACCTAAAAATGCTTGCTTTCAACGACCACCATCAAGATGTTATGGGATTTAATTCTGTGCATCTTCTGGAGGGCGTTGATTTTTTTCCTAACAACTTGCGAAGTTTTGGATGGAGTGCATATCCATTAAATTCTCTACCATCAAATTTTTCTCCATCGAATCTTGTTGAACTTTACCTTCCCTATAGCAACCTGGAAAAACTTTGGAATGGAGCACAGAATTTTCCGAGTTTAGAGAGAATTGACCTTAGTAAGTCTGCACGCTTGTTAGAGTGTCCAAATTTTTCCAATGCCCCAAATCTTAAGCATATAAAACTTGAAAATTGTGAAAGCATATGTCATGTTGACCCATCTATTTTCAATCTCCCAAAGCTTGAAGACCTAAATGTGAGTGGATGTAAGTCACTTAAGAGCCTCTACAGCAGCACTCGTTCACAATCTTTCCAGAGACTTTATGCAGGTGAATGTTACAATCTCCAAGAGTTCATATCAATGCCCCAAAACACTAACGATCCTTCCACAACGACAACTGGGCTGACATCATCAACTTTGCTCATCAGAAATCTTGATGTATTTACTTTTCCCATTTGTGAGAGTCTTGTGGATCTTCCTGAAAACTTTTCATACGATATCACACTTTCTGACTCAAAGATGAATGACAAAGATACTTTGACCACCTTGCATAAATTACTCCCTAGCCCTTGTTTCAGGTATGTTAGAGGTTTATGTTTCAGTTATTGTCACAATTTATCTGAAATCCCAGACAGCATCTCCTTGCTATCATCATTGGAGAATTTAGGACTATTTGCCTGTCCTATCATAAGCTTACCTGAAAGCATTAATTGTCTTCCAAGACTCATGTTTTTTGAAGTTGCTAACTGTGAAATGCTTCAATCTATACCTTCTCTTCCACAATCCATTCAGTCGTTCCGTGTTTGGAACTGTGAATCTCTTCAGAATGTGTTGAATTGAACAAATGAACAAACCAAAATACACCAAAATACGCGTACTTTTCTCCTCCCTAACTGCATAAAATTGAATCAACATTCATTTGTTTCCATTTTGAATGATGCCATTGTAAGAATTGAACTCGGAACAAAACCACTACTCCCAGCAGATGTATTAGAAAACAAGGAAGAAGCAGCTTCAGATAATAATGATGATGATGGTTACAATTACTCTTATAATTGGGACACTTTAATAAAAGGTAAGATTTGCTACATGTTACCAGCTGGAAATTTTAAAAATGGAGACTGGTTCCATTACCATTCTACACAAACTTTGGTGTCTATTGAACTTCCCCCCAGTGATAATTTGGGTTTCATTTTCTACTTGGTTCTTTCTCAAGTTCAATCATATCGCATTGGATACCATGGAAGTTTTGGATGTGAGTGCTACTTAGAAACCACTTGCGGTGAATGTATAAGTATAAGAAGTTTCTTTGTAGATGAAAGCGTTTTGCTTAATCCTCATACTCCATTACACATATTTTCGGATCATTTGTTTTTATGGTACGATGCACAATGTTGCAAGCAAATAATGGAAGCTGTCAAAGAAATAAAAGCCAATGACATGAGTGCCATTCACAATTCAAAGCTTACATTTAAATTCTTCGCTCGTACTCAAGATAACATGGAAGCAGCGATAAAAGAGTGTGGTTTTCGATGGATATATTCCTCAGAAGGTCAAGTTGTCGAGGAAGAAGAAGGATGTGAATCTGAGACAAGTAAGGAAACTCACACAGTGGAGGGTTCTGAATCTGATGAGCAAGAAGAAACAGTTCCACCAGCAATGAATTTTCAGCAAAGTGTCTATGGAACTCCCAATCTGGAAGCAGTAGAAACAAAAGACTTAAGGAGTGTACTTGAAGAACTCTTGCATATTGGATTTGGCGGAGACCTCATGTTATAA 3738 0.3654 MAMASSSSSSPLKKHDVFISFRGEDTRANFTSFLHAALCRNHIETYIDYRIEKGKEVWEELEKAIKASALFLVVFSENYASSTWCLNELVEIM*CKKYDKDNVVVIPVFYRIEPSHVRKQTGSYHTALAKQKKQGKDKIQKWKNALFEVANLSGFDSSTYRTESVLIEDIIKAVLQILNQKYRNELRCLFIPDENYSSIESLLKVDSREVRTIGIWGMGGIGKTTLAAAIFQKVSSMYEGSCFLENVTEESKRHGLSYTYNRLLSKLLGEDLHIETPKVISSMVMKRLKRMKAFIVLDDVRTLELLDNLIGAGHDCLGVGSRVIVTTRDKHVLTGGGIDEIHQVKEMNSQNSIRLFSLNAFKKILPNEGYEEISNNVVSYTKGNPLALKVLGSFLRTKSKKEWNSALNKLKEIPNAEIQKVLRLSYDELDDTEKNIFLDVACFFKGFGSSSSVTKILNACGFFADIGIRNLLDKALVTITSENFIKMHDLIKQMGREIVREESIKNPRQRSRLWNADEICDVLTDNNVIMIYTLTCIAKNMYIYRVLLEDTFYEGVFTPSWVSYSKTHIYIYMILIFIYQGTTAVESICLDMDQTTCINLNSNAFTKMPNLKMLAFNDHHQDVMGFNSVHLLEGVDFFPNNLRSFGWSAYPLNSLPSNFSPSNLVELYLPYSNLEKLWNGAQNFPSLERIDLSKSARLLECPNFSNAPNLKHIKLENCESICHVDPSIFNLPKLEDLNVSGCKSLKSLYSSTRSQSFQRLYAGECYNLQEFISMPQNTNDPSTTTTGLTSSTLLIRNLDVFTFPICESLVDLPENFSYDITLSDSKMNDKDTLTTLHKLLPSPCFRYVRGLCFSYCHNLSEIPDSISLLSSLENLGLFACPIISLPESINCLPRLMFFEVANCEMLQSIPSLPQSIQSFRVWNCESLQNVLN*TNEQTKIHQNTRTFLLPNCIKLNQHSFVSILNDAIVRIELGTKPLLPADVLENKEEAASDNNDDDGYNYSYNWDTLIKGKICYMLPAGNFKNGDWFHYHSTQTLVSIELPPSDNLGFIFYLVLSQVQSYRIGYHGSFGCECYLETTCGECISIRSFFVDESVLLNPHTPLHIFSDHLFLWYDAQCCKQIMEAVKEIKANDMSAIHNSKLTFKFFARTQDNMEAAIKECGFRWIYSSEGQVVEEEEGCESETSKETHTVEGSESDEQEETVPPAMNFQQSVYGTPNLEAVETKDLRSVLEELLHIGFGGDLML* 1246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1006 1243 Pfam NB-ARC domain 198 428 IPR002182 GO:0043531
Mtr8g1006 1243 Gene3D - 345 429 IPR042197 -
Mtr8g1006 1243 MobiDBLite consensus disorder prediction 1174 1202 - -
Mtr8g1006 1243 Pfam Leucine Rich Repeat 662 681 IPR011713 -
Mtr8g1006 1243 Pfam TIR domain 14 183 IPR000157 GO:0007165
Mtr8g1006 1243 Pfam C-JID domain 1025 1168 IPR045344 -
Mtr8g1006 1243 SUPERFAMILY L domain-like 588 950 - -
Mtr8g1006 1243 PRINTS Disease resistance protein signature 286 300 - -
Mtr8g1006 1243 PRINTS Disease resistance protein signature 380 394 - -
Mtr8g1006 1243 PRINTS Disease resistance protein signature 728 744 - -
Mtr8g1006 1243 PRINTS Disease resistance protein signature 211 226 - -
Mtr8g1006 1243 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 438 IPR027417 -
Mtr8g1006 1243 ProSiteProfiles TIR domain profile. 13 177 IPR000157 GO:0007165
Mtr8g1006 1243 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 590 815 IPR044974 GO:0006952
Mtr8g1006 1243 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 834 938 - -
Mtr8g1006 1243 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 590 815 - -
Mtr8g1006 1243 Gene3D - 9 180 IPR035897 -
Mtr8g1006 1243 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 10 551 - -
Mtr8g1006 1243 SMART till_3 14 151 IPR000157 GO:0007165
Mtr8g1006 1243 Gene3D - 181 336 IPR027417 -
Mtr8g1006 1243 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 10 551 IPR044974 GO:0006952
Mtr8g1006 1243 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 834 938 IPR044974 GO:0006952
Mtr8g1006 1243 SUPERFAMILY "Winged helix" DNA-binding domain 416 522 IPR036390 -
Mtr8g1006 1243 MobiDBLite consensus disorder prediction 1180 1194 - -
Mtr8g1006 1243 Gene3D Ribonuclease Inhibitor 581 784 IPR032675 -
Mtr8g1006 1243 Gene3D Ribonuclease Inhibitor 785 960 IPR032675 -
Mtr8g1006 1243 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 154 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1006 Mtr-Chr8 12232154 12237959 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1006 13 894 WRKY Transcription Factor Family AT4G12020 30.942 6.01e-102 355
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1006 - - mtr:MTR_8g433020 1885.15