Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g1003 ATGCCTCGTGGAACGCTTGAAGTTGTTTTGATCAGTGCTAAAGGCCTTGAAGACAATGATTTTCTCTCTAGCATAGATCCTTATGTGATCCTCACTTACAGGGCACAGGAGCACAAGAGTACTGTGCAAGAAGGTGCTGGATCCAACCCTCAATGGAATGAGACATTTCTTTTCACTGTTTCTGACACTGCTTATGAGCTCAATCTAAAGATAATGGAAAAGGACAACTATAGTGCTGATGATAATCTTGGAGAAGTAATAATTCCTTTAGAGACAGTGATTCAAGAGGGTAGCGTTCCAGAGAATTCTTACAAACTTGTGAAAGATGAAAAATATTGTGGAGAGGTTAAGGTTGCTCTCACTTTTACACCTGAGAGAAACTACGAACGGAGTTACAATCAAGAGGAGGAGACCGGAGGATGGAAACAATCGGCTAGGGACTTTTGA 447 0.4139 MPRGTLEVVLISAKGLEDNDFLSSIDPYVILTYRAQEHKSTVQEGAGSNPQWNETFLFTVSDTAYELNLKIMEKDNYSADDNLGEVIIPLETVIQEGSVPENSYKLVKDEKYCGEVKVALTFTPERNYERSYNQEEETGGWKQSARDF* 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g1003 148 Gene3D C2 domain 2 125 IPR035892 -
Mtr8g1003 148 ProSiteProfiles C2 domain profile. 1 103 IPR000008 -
Mtr8g1003 148 MobiDBLite consensus disorder prediction 129 148 - -
Mtr8g1003 148 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 1 148 - -
Mtr8g1003 148 PANTHER C2 DOMAIN-CONTAINING 1 148 - -
Mtr8g1003 148 SMART C2_3c 5 102 IPR000008 -
Mtr8g1003 148 Pfam C2 domain 4 106 IPR000008 -
Mtr8g1003 148 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 1 126 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g1003 Mtr-Chr8 12201381 12203407 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g1003 4 94 C2H2 Transcription Factor Family AT4G21160 35.165 4.19e-11 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g1003 - - gmx:100500006 224.172