Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0973 ATGTCTTTCACTGGAACTCTTGATAAATGCAAGGCTTGTGACAAGACTGTTTATGTGGTTGATTTGTTAACTCTTGAAAATATTCCATACCATAAAAGCTGCTTCAAATGTAGTCATTGCAAGGGAAATCTTACGATGAGTACATACTCCTCCATGGATGGAATTCTCTATTGCAAAACACATTTTGAACAGCTTTTCAAGGAATCTGGCAATTTTAGCAAGAACTTTGCAAAGTCTTCTGACAAAGCAAATGAGCTGAATAGGACACCAAGTAGACTATCTTCCATGTTCAGTGGTACCCTGGACAAATGTGCGACTTGCTCTAAAACTGTCTATCCGCTGGAAAAGGTTTGTCGCGATTCTTGATTTTGAGGAAAATTGTTGTTTTTGTTATGATCCTTGATTTTGCGGAAAATTGTTTCTTATAAAAATTTGGTTGTGACATTGGAAGGAGAAATCTACCACAAGACATGCTTTAGGTGTGCTCATGCAGGGTGCCCTCTCACACATTCAAACTATGCTGCTCTTGATGGTGTCCTATACTGCAGGGTTCATTTTGCACAACTTTTCATGGAGAAAGGTAACTACAGTCATGTACTCAAATCTGCACACAAGAGGAATGGTTCTTCTTCTGAATCAGTTGAAGTTGTTGAAGAGCCTTCACAATCAGCAGAAGCACCTCAAGATCATCCAGAAGAAACCTCTTGA 708 0.3912 MSFTGTLDKCKACDKTVYVVDLLTLENIPYHKSCFKCSHCKGNLTMSTYSSMDGILYCKTHFEQLFKESGNFSKNFAKSSDKANELNRTPSRLSSMFSGTLDKCATCSKTVYPLEKVCRDS*F*GKLLFLL*SLILRKIVSYKNLVVTLEGEIYHKTCFRCAHAGCPLTHSNYAALDGVLYCRVHFAQLFMEKGNYSHVLKSAHKRNGSSSESVEVVEEPSQSAEAPQDHPEETS* 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0973 232 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 157 196 - -
Mtr8g0973 232 ProSiteProfiles LIM domain profile. 8 68 IPR001781 -
Mtr8g0973 232 Gene3D Cysteine Rich Protein 5 72 - -
Mtr8g0973 232 Gene3D Cysteine Rich Protein 100 193 - -
Mtr8g0973 232 ProSitePatterns LIM zinc-binding domain signature. 10 44 IPR001781 -
Mtr8g0973 232 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 36 76 - -
Mtr8g0973 232 ProSiteProfiles LIM domain profile. 102 189 IPR001781 -
Mtr8g0973 232 SMART lim_4 9 61 IPR001781 -
Mtr8g0973 232 SMART lim_4 103 182 IPR001781 -
Mtr8g0973 232 MobiDBLite consensus disorder prediction 203 232 - -
Mtr8g0973 232 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 1 119 - -
Mtr8g0973 232 PANTHER GATA TYPE ZINC FINGER TRANSCRIPTION FACTOR FAMILY PROTEIN 140 232 - -
Mtr8g0973 232 PANTHER OS06G0237300 PROTEIN 1 119 IPR045268 GO:0051015
Mtr8g0973 232 PANTHER OS06G0237300 PROTEIN 140 232 IPR045268 GO:0051015
Mtr8g0973 232 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 3 35 - -
Mtr8g0973 232 Pfam LIM domain 138 186 IPR001781 -
Mtr8g0973 232 Pfam LIM domain 10 65 IPR001781 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0973 Mtr-Chr8 11864691 11866626 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LIM Mtr8g0973 LIM 5.3e-12 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0973 - K09377 gmx:100305845 336.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g0973 8 11864691 11866626 Mtr8g0973 8 11864691 11866626 ECH
Mtr7g1956 7 35640256 35641829 Mtr8g0973 8 11864691 11866626 PCT