Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0963 ATGGGAAGAACACCTTGTTGTGATAACAAAATGGGGTTGAAGAAAGGTCCTTGGACTAGTGAAGAAGATGAAGTTCTTGTTAATTTTATCAAGAAAAATGGTGGTCATGGAAGCTGGCGTTCTCTTCCTAAGTTAGCAGGCCTTCTTCGTTGTGGTAAGAGTTGCCGGCTAAGATGGACAAACTACCTAAGACCTGATATTAAACGCGGTCCCTTTACACCTGAGGAAGAAAAACTAGTCATACAGCTTCATGCCATACTTGGAAACAGATGGGCTTCAATAGCCTCTCAGCTACCAGGAAGAACTGACAATGAGATCAAGAATTTATGGAACACACACTTAAAGAAACGTCTCATATGCATGGGAATTGATCCACAAACTCATGAACCAATAGCCTCATCACATTACTTCCCAATTTCCAAATCAAATTCGTCTATCGCCACGCGCCACATGGCTCAATGGGAAAGTGCAAGACTTGAAGCAGAAGCAAGGCTCTCAAAAGACACATCTTTATTCAACAATGGCAACATTCCTTCTTTGGCAAGCAACAAAGCTGATTCTGACTATTTCCTTAAGATATGGAACTCTGAAGTTGGACAATCTTTTCGTACCGGCCGCAAATCAGACGACGAGGACGATGATGATAAAACTAAGTGCCAAAGTTCAATGTCTCAAGAAGGGTCATCTTGTAATAACAATAACAAATGTGGATCAGTTTCTGTTACTACTACAACAAGCAATGTGATGGAGGATTTTGAATGGAGAAACTACAAGTCATTTGATGTAGGTTATGATGATTCATCAAGCTCTAATGATCTTGAAGACTCATCTGACACTGCACTGCAACTCTTGTTGGATTTTCCTTCTAACAATGATATGAGCTTCTTAGAATGA 894 0.4027 MGRTPCCDNKMGLKKGPWTSEEDEVLVNFIKKNGGHGSWRSLPKLAGLLRCGKSCRLRWTNYLRPDIKRGPFTPEEEKLVIQLHAILGNRWASIASQLPGRTDNEIKNLWNTHLKKRLICMGIDPQTHEPIASSHYFPISKSNSSIATRHMAQWESARLEAEARLSKDTSLFNNGNIPSLASNKADSDYFLKIWNSEVGQSFRTGRKSDDEDDDDKTKCQSSMSQEGSSCNNNNKCGSVSVTTTTSNVMEDFEWRNYKSFDVGYDDSSSSNDLEDSSDTALQLLLDFPSNNDMSFLE* 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0963 297 MobiDBLite consensus disorder prediction 221 237 - -
Mtr8g0963 297 CDD SANT 17 63 IPR001005 -
Mtr8g0963 297 MobiDBLite consensus disorder prediction 203 220 - -
Mtr8g0963 297 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 296 - -
Mtr8g0963 297 Gene3D - 12 69 - -
Mtr8g0963 297 CDD SANT 71 114 IPR001005 -
Mtr8g0963 297 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Mtr8g0963 297 MobiDBLite consensus disorder prediction 202 237 - -
Mtr8g0963 297 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Mtr8g0963 297 SMART sant 68 116 IPR001005 -
Mtr8g0963 297 SMART sant 14 65 IPR001005 -
Mtr8g0963 297 ProSiteProfiles Myb-like domain profile. 10 63 IPR001005 -
Mtr8g0963 297 PANTHER PROTEIN ODORANT1-LIKE 1 296 - -
Mtr8g0963 297 Pfam Myb-like DNA-binding domain 15 63 IPR001005 -
Mtr8g0963 297 Pfam Myb-like DNA-binding domain 69 114 IPR001005 -
Mtr8g0963 297 Gene3D - 71 118 - -
Mtr8g0963 297 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 63 IPR017930 -
Mtr8g0963 297 SUPERFAMILY Homeodomain-like 11 110 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0963 Mtr-Chr8 11788892 11792034 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g0963 1 297 MYB Transcription Factor Family AT3G61250 62.252 1.04e-121 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr8g0963 Myb_DNA-binding 3.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0963 K09422 - gmx:100816569 391.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr7g1958 7 35646524 35650195 Mtr8g0963 8 11788892 11792034 PCT