Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mtr8g0956 | ATGGCATCTTCTTCAGACTCATGGGTGAAGGAATATAATGAAGCAATGAAACTTGCCGATGATATCAGTGGCATGATTTCTGAACATAATTCATTTCCTTCATCTGGACCAGAAACACAACGTCATGCATCTGCTATAAGAAGGAAGATCACAATATTGGGGACCCGACTAGATAGCTTGCAATCCCTTTTGTCAAAGCTCCCTGTAAAGTCTGAGAAGGAGATGAATCGTCGCAAGGACAACCTTGCAAATTTGAGGTCAAAGGTTAACCAAATGGCTTCAACTTTGAACATGTCAAACTTTGCAAATAGGGATAGTTTGCTCGGGCCAGAAATTAAACCAGATGCAATGAGCAGAACTGTTGGCCTGGACAACAATGGACTTGTTGGTCTGCAAAGGCAAGTTATGAAAGAACAAGATGAGGGCCTTGAGAAATTGGAGGAGACTGTATTAAGTACAAAACATATTGCGTTGGCAGTGAATGAAGAGCTGACTCTACACACTAGACTCATTGATGACTTGGACGAACATGTAGATATCACAGATTCTCGGCTGAGGAGAGTGCAGAAGAACTTGGCAATTTTAAACAAACGTACTAAGGGAGGTTGCTCGTGCATGTGCATGCTATTAGCAGTGATTGGTATAGTGGGTTTGGTTCTTGTCATATGGCTTCTTGTCAAATATTTGTAA | 690 | 0.4145 | MASSSDSWVKEYNEAMKLADDISGMISEHNSFPSSGPETQRHASAIRRKITILGTRLDSLQSLLSKLPVKSEKEMNRRKDNLANLRSKVNQMASTLNMSNFANRDSLLGPEIKPDAMSRTVGLDNNGLVGLQRQVMKEQDEGLEKLEETVLSTKHIALAVNEELTLHTRLIDDLDEHVDITDSRLRRVQKNLAILNKRTKGGCSCMCMLLAVIGIVGLVLVIWLLVKYL* | 230 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mtr8g0956 | 229 | PANTHER | SYNTAXIN | 1 | 224 | IPR045242 | - | |
| Mtr8g0956 | 229 | CDD | SNARE_Qc | 136 | 193 | - | - | |
| Mtr8g0956 | 229 | SMART | tSNARE_6 | 128 | 195 | IPR000727 | - | |
| Mtr8g0956 | 229 | Pfam | SNARE domain | 170 | 221 | IPR000727 | - | |
| Mtr8g0956 | 229 | SUPERFAMILY | SNARE fusion complex | 124 | 194 | - | - | |
| Mtr8g0956 | 229 | Gene3D | - | 134 | 197 | - | - | |
| Mtr8g0956 | 229 | PANTHER | TARGET SNARE COILED-COIL DOMAIN-CONTAINING PROTEIN-RELATED | 1 | 224 | - | - | |
| Mtr8g0956 | 229 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 133 | 195 | IPR000727 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mtr8g0956 | Mtr-Chr8 | 11707552 | 11712211 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mtr8g0956 | 1 | 229 | SNARE and Associated Proteins | AT1G79590 | 75.107 | 4.39e-124 | 350 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mtr8g0956 | K08503 | - | gmx:100794038 | 395.201 |