Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0949 ATGGATCGAGGGGACCAAATGGCGGCATTATCCGGTTCTGCATCATACTTTATGCAGAGAGGATTACCTGGTTCTGGAAACCAACATGAGTTGCATAATTCGCCTGGTATTCGTCCACTGAATACCAATTCATCGTTTCAATCAAGCATTGGTGGTGGTGGTACTATTGGATCCACGTTGCCGATGGATTCTTCTGGAATTGGATCTCAATGTATCAATGTAGGTGCTTCTTCTGGGGGTGCTGCTTCAACCGGTGAACCTGCCAAAAGGAAGCGTGGAAGGCCTAGAAAATACGGGGCTGATGGAAGTGTGTCCTTAGCATTGACTCCAACAACACCAGCAAGCCATCCTGGAACCGTACCGCAAGTCCAGAAACGCGGTCGAGGGCGCCCTCCAGGGTCCGGGAAAAAACAACAGTTGGCTTCTTTCGGTGGTTTGATCTCCAGTTCAGCTGGAAATGGTTTCACTCCTCATGTCATCTCAATTGCAATTGGAGAAGACATTGCAACAAAAATTCTGGCATTTTCTCAGCAGGGACCTAGAACTATATTTGTTATGTCGGCCAATGGTGCTGTCTCTACTGTGACACTTTGTCAGGCTTCGACATCTGGGGGTTCTGTCACATATGAGGGGCGTTTTGAGATACTAAGCCTGACAGGCTCTTACTTGGTTGCTGATAATGATGGCTCGCGTAATCGAACGGGTTCATTAAGTGTTTCTCTTGCCAGTCCTGACGGTCGTGTCATTGGTGGAGGCGTCGGTGGATTGCTCATTGCTGCAAGTCCTGTTCAGGTGATAATTGGGAGCTTTATGTGGGGTGGACCAAAAACCAAGAACAAGAAGAATGAAGATTCAGAAGATCAAGAAGTTGGTGTAGAGGAAAATCATCATCATGGAGTTCATAATCCAGCTGCAATGAATAGCATGTCACCAAATCAAAATCTGACTCCAACATCTCTCAATTCTTGGCCTGCATCGCGTCCATTGGATATGCGTAATTCTCATATCGACATTGATTTAATGCGTGGGTGA 1032 0.4661 MDRGDQMAALSGSASYFMQRGLPGSGNQHELHNSPGIRPLNTNSSFQSSIGGGGTIGSTLPMDSSGIGSQCINVGASSGGAASTGEPAKRKRGRPRKYGADGSVSLALTPTTPASHPGTVPQVQKRGRGRPPGSGKKQQLASFGGLISSSAGNGFTPHVISIAIGEDIATKILAFSQQGPRTIFVMSANGAVSTVTLCQASTSGGSVTYEGRFEILSLTGSYLVADNDGSRNRTGSLSVSLASPDGRVIGGGVGGLLIAASPVQVIIGSFMWGGPKTKNKKNEDSEDQEVGVEENHHHGVHNPAAMNSMSPNQNLTPTSLNSWPASRPLDMRNSHIDIDLMRG* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0949 343 Pfam Plants and Prokaryotes Conserved (PCC) domain 157 270 IPR005175 -
Mtr8g0949 343 MobiDBLite consensus disorder prediction 105 119 - -
Mtr8g0949 343 SUPERFAMILY AF0104/ALDC/Ptd012-like 153 273 - -
Mtr8g0949 343 MobiDBLite consensus disorder prediction 276 326 - -
Mtr8g0949 343 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 52 317 IPR039605 GO:0003680
Mtr8g0949 343 MobiDBLite consensus disorder prediction 305 326 - -
Mtr8g0949 343 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 52 317 - -
Mtr8g0949 343 MobiDBLite consensus disorder prediction 277 300 - -
Mtr8g0949 343 MobiDBLite consensus disorder prediction 76 140 - -
Mtr8g0949 343 ProSiteProfiles PPC domain profile profile. 152 298 IPR005175 -
Mtr8g0949 343 SMART AT_hook_2 125 137 IPR017956 GO:0003677
Mtr8g0949 343 SMART AT_hook_2 89 101 IPR017956 GO:0003677
Mtr8g0949 343 CDD DUF296 156 270 IPR005175 -
Mtr8g0949 343 Gene3D - 157 299 - -
Mtr8g0949 343 MobiDBLite consensus disorder prediction 19 63 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0949 Mtr-Chr8 11655989 11663029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g0949 1 343 AT-hook Motif Nuclear Localized (AHL) Family AT3G61310 50.411 8.12e-87 264
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0949 - - gmx:100799791 460.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g0949 8 11655989 11663029 Mtr8g0949 8 11655989 11663029 ECH
Mtr7g1981 7 35819650 35826670 Mtr8g0949 8 11655989 11663029 PCT