Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0904 ATGTCTGCTATTAGGTTTTCTCATGTAAAGTCTCTTCATAGTTCAATCAAGGGTTTTTCCAATTTCAATGTCCAAAATTATCACTCTAACCCTAATGGGTCATTGAATCTTGCAAGAATTTCAAGTTTTTGTACTGATTTCTCGAGCCGTGGTTATTCAAAAAATGGGTTTAAGTCACCTAAGATGTTTGCTGAGACTGAGTTTAGAAATTTGGGTTCTTTATCAGGTCATAGGGGTTTCAAATTCAATGCTGCATTTGAAACCCAAGGGTTTAGTTCACCTAGGGTATGTTTCAGTGTTGTTAATATTCCCTTTGCTTCGAATTCGATGATGACCAATGGGTTGAGTTCCCGAATGTATTCATCGGGTCTGGGAGGGGAAGGAAGTAAGAATGGTGAAACAGAAGTGGGTGTTGGGACTGGTGTGAGTGATGTGAAGGGTGGGGGTGGTGGTGATTCGTTTGTTTCGGGTGATTTGGTTGATAGGATGAAAGATACATGGAAGAGTGTTGTTGAGGCAGTTTCATATGCTGGTGATAAGGTTAAAGAAGGTTCTGACGGTGTTACTCCATATGCTCAACAATTTCTCGATTCACATCCTTATCTTAACATGGTGGTTGTTCCGGTTGGTGGTACTTTAACTGCTACTCTAGTAGCTTGGTTCATCTTACCGAGGATTTTGAGGAAATTTCACAAATATGGAATGCAAAGTCCGGTTTCTCTGTTTCAAGTAAGCTTGTCAGGGGAGCCAGTTCCTTATGAGAAAAGCTTTTGGGGTGCTATGGAAGACCCGGTGCGATATTTGGTTACCTTCTTGGCATTCTCACAAATTGCTGCAATGGTAGCTCCAACAGCTATAGCATCGCAATATCTTGTACCCACTTGGAGGGGTGCAGTGATTCTTTCATTTGTATGGTTTTTGCATAGATGGAAAACAAATGTTTTTGCACGGACGTTGACTAGTCAAAGCGTACTTGGACTTGATAGGGAGAAAATGCTTGCTCTAGACAAAATCTCATCTATTGGTCTATTTGTGATTGGTATAATGGCTTTGGCTGAGGCTTGTGGTGTGGCTGTGCAATCTATTGTAACAGTTGGTGGTGTAGGAGGAGTTGCTACTGCTTTTGCTGCCAGAGACGTACTTGGCAATGTGTTCAGCGGTTTATCCATGCAGTTTTCTAAGCCCTTCTCAATTGGAGATACAATAAAAGCTGGATCGATAGAGGGTCAAGTGGTGGAAATTGGTCTTACTAGCACATCATTGCTAAGCCCCGAGAAGTTCCCAATCATTGTGCCGAACTCATTTTTTTCTAGCCAGGTAATTGTGAACAAGTCCCGTGCCGAATATCGTGCCATTCTTACCAAAATCCCTCTTCAAACTGAGGATTTCAGTAAGATTCCCCATATAGCGAATGATGTAAAAGGCATGTTAACATCAAATGCAAAAGTTTTCTTAGAAAAAGATGTTCCCTGCTGTTTCTTGTCACGCATAGAAAGTAAATATGCAGAATTGACTCTTGGATACAACCTCAAGAACATGCGCAAAGATGAGCTGTACTCTGCAGAACAAGATATTCTCCTGCAAGCAGTTCAGATCATTAAGAATCATGGTGTTGCTCTTGGAAGCACATGGAATGACACTAAGTAA 1647 0.4129 MSAIRFSHVKSLHSSIKGFSNFNVQNYHSNPNGSLNLARISSFCTDFSSRGYSKNGFKSPKMFAETEFRNLGSLSGHRGFKFNAAFETQGFSSPRVCFSVVNIPFASNSMMTNGLSSRMYSSGLGGEGSKNGETEVGVGTGVSDVKGGGGGDSFVSGDLVDRMKDTWKSVVEAVSYAGDKVKEGSDGVTPYAQQFLDSHPYLNMVVVPVGGTLTATLVAWFILPRILRKFHKYGMQSPVSLFQVSLSGEPVPYEKSFWGAMEDPVRYLVTFLAFSQIAAMVAPTAIASQYLVPTWRGAVILSFVWFLHRWKTNVFARTLTSQSVLGLDREKMLALDKISSIGLFVIGIMALAEACGVAVQSIVTVGGVGGVATAFAARDVLGNVFSGLSMQFSKPFSIGDTIKAGSIEGQVVEIGLTSTSLLSPEKFPIIVPNSFFSSQVIVNKSRAEYRAILTKIPLQTEDFSKIPHIANDVKGMLTSNAKVFLEKDVPCCFLSRIESKYAELTLGYNLKNMRKDELYSAEQDILLQAVQIIKNHGVALGSTWNDTK* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0904 548 Pfam Mechanosensitive ion channel 337 539 IPR006685 GO:0016020|GO:0055085
Mtr8g0904 548 Gene3D - 395 443 IPR023408 -
Mtr8g0904 548 SUPERFAMILY Sm-like ribonucleoproteins 379 444 IPR010920 -
Mtr8g0904 548 SUPERFAMILY Mechanosensitive channel protein MscS (YggB), transmembrane region 292 378 IPR011014 GO:0016020
Mtr8g0904 548 PANTHER YNAI-RELATED MECHANOSENSITIVE ION CHANNEL 132 546 - -
Mtr8g0904 548 Gene3D - 294 394 - -
Mtr8g0904 548 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 1, MITOCHONDRIAL-RELATED 132 546 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g0904 160 547 Mechanosensitive Ion Channel Family AT4G00290 66.237 0.0 553
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0904 K22047 - gmx:100814954 700.664