Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0900 ATGGATGTGAAAGTGGCAAGGAGTAGTAGAACTGAACAAGTCATCGGGAAAACATGTTTTTATTGGCTCGCTGGGAAATGCAACAGAAATCCTTGTAGGTTTCTTCATAGTGTAGCACCATCGACTGCTTCCTGCAATGCTGCCAACGCTGGATATCATAATGCTGCAAGGAAGCGGCATTACCCTTCACAAGGTGAAACGACATCATACCCGTCTTCTTGCAGAGCTGATACTGGATATTATAATGCTGCAAAGAAGCACCATTCGTCGTATGTGTATGAGAAGCCCCTTCCCAAACATAACACGAAGGCTGCATCGTATGTGTATGAGAAGCCCCTTCCCAAACCTAATGCGAATACAGTCTTGAATAGAAAGATTGGAGATAACAAAGACACGACTCAAGTCGTTGAGGCTTCCCTTTCCAAACATAATACAAAGACTATCTTGAATAGAAAGACTGGAGATGACAAAGCAAGTACAGAAGTTGCTGAGGCTTCCCTTCCCAAACATAATACTGAACCAGTCTTGAACAGAGATGGGACAGAAGTAGATGAAGTTTCTCAGAAGCCTTCACTGAGTATCTGCAAATACTGGGTGAATGACAGTTGTGTTCATGGTGATCAGTGCCAGAATTTACATTCATGGTTTTATGGTGATGGGTTTTCCTCAATAGCAAAGCTTGAGGGACACAAGAAGCTTATCACTGGAATGACAATTCCGGATGGATCAGACAAACTTTATTCTGGCAGCACGGATGGGACACTTCGGACATGGGACTGCCGTACTGGTCAATGTGTTGATGTGACGAATCTGGGCGCTGAAGTTACCTGTTTGATCAGTGAGGGCCCATGGATTTTTGTTGGTATGAAGGACATTGTCAAGGCATGGCATATTTCAATTGCTGCACCTTTTACTCTTGATGGACCTAAGGGACAAGTCCATGCTATGATTGTTGCTAAGGATACTCATACACTCTTAGCTGGAGCAGAGGATGGTGTAATTTCTGCATGGAGAGGCAGCTCCGAAGCCAATTCCCCTTTTAAACTGGTTGCATCACTATGTGGCCACACTAAATCTGTTGTTTGCCTAGCTGTTGGGGGCTCCAAGATGTTGTATTCAGGATCCAAGGATCAAACCATTAAGATTTGGGACCTTGACACATTTGAGTGTACAATGACACTCAATGCACATACAGATGCAGTCACTTCCCTTATTTGTTGGGACAAGTTCTTGTTATCCGGTTCATCTGACTGCACCATCAAGGTCTGGTTTCAAAACGAAGCAGGGACTTTGGAAGTGGCATATTCACACAATGTGGAAAATGGTGTTGTTACACTCTCTGGGATGACTGATCCAGAAAATAAGCCTATAATATTCTGCTCAGCCGGAGATAATTCAGTTCACCTCTACGAACTGCCATCATTTGCAGAGAGGGGTAGACTGTTTGCAAAGGAAGAAGTTGGATTAGTTGATATAGCCCCAGGCGGTCTCTTCTTCACTGGAGAAAGAACTGGTTTGCTGACAGTCTGGAAATGGTTGGAAGAATACAAGGTTGTGGCATCCTCTTGA 1569 0.4398 MDVKVARSSRTEQVIGKTCFYWLAGKCNRNPCRFLHSVAPSTASCNAANAGYHNAARKRHYPSQGETTSYPSSCRADTGYYNAAKKHHSSYVYEKPLPKHNTKAASYVYEKPLPKPNANTVLNRKIGDNKDTTQVVEASLSKHNTKTILNRKTGDDKASTEVAEASLPKHNTEPVLNRDGTEVDEVSQKPSLSICKYWVNDSCVHGDQCQNLHSWFYGDGFSSIAKLEGHKKLITGMTIPDGSDKLYSGSTDGTLRTWDCRTGQCVDVTNLGAEVTCLISEGPWIFVGMKDIVKAWHISIAAPFTLDGPKGQVHAMIVAKDTHTLLAGAEDGVISAWRGSSEANSPFKLVASLCGHTKSVVCLAVGGSKMLYSGSKDQTIKIWDLDTFECTMTLNAHTDAVTSLICWDKFLLSGSSDCTIKVWFQNEAGTLEVAYSHNVENGVVTLSGMTDPENKPIIFCSAGDNSVHLYELPSFAERGRLFAKEEVGLVDIAPGGLFFTGERTGLLTVWKWLEEYKVVASS* 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0900 522 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 353 387 - -
Mtr8g0900 522 ProSitePatterns Trp-Asp (WD) repeats signature. 371 385 IPR019775 -
Mtr8g0900 522 Gene3D - 297 521 IPR015943 GO:0005515
Mtr8g0900 522 ProSiteProfiles Trp-Asp (WD) repeats profile. 227 268 IPR001680 GO:0005515
Mtr8g0900 522 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 227 264 - -
Mtr8g0900 522 SMART WD40_4 299 338 IPR001680 GO:0005515
Mtr8g0900 522 SMART WD40_4 346 384 IPR001680 GO:0005515
Mtr8g0900 522 SMART WD40_4 220 259 IPR001680 GO:0005515
Mtr8g0900 522 SMART WD40_4 387 424 IPR001680 GO:0005515
Mtr8g0900 522 ProSiteProfiles Trp-Asp (WD) repeats profile. 394 423 IPR001680 GO:0005515
Mtr8g0900 522 PANTHER - 8 522 IPR044715 -
Mtr8g0900 522 SUPERFAMILY WD40 repeat-like 198 511 IPR036322 GO:0005515
Mtr8g0900 522 ProSiteProfiles Zinc finger C3H1-type profile. 189 216 IPR000571 GO:0046872
Mtr8g0900 522 Gene3D - 207 296 IPR015943 GO:0005515
Mtr8g0900 522 PRINTS G protein beta WD-40 repeat signature 246 260 IPR020472 -
Mtr8g0900 522 PRINTS G protein beta WD-40 repeat signature 371 385 IPR020472 -
Mtr8g0900 522 PRINTS G protein beta WD-40 repeat signature 411 425 IPR020472 -
Mtr8g0900 522 ProSitePatterns Trp-Asp (WD) repeats signature. 246 260 IPR019775 -
Mtr8g0900 522 ProSiteProfiles Zinc finger C3H1-type profile. 18 39 IPR000571 GO:0046872
Mtr8g0900 522 Pfam WD domain, G-beta repeat 224 259 IPR001680 GO:0005515
Mtr8g0900 522 Pfam WD domain, G-beta repeat 348 384 IPR001680 GO:0005515
Mtr8g0900 522 Pfam WD domain, G-beta repeat 389 423 IPR001680 GO:0005515
Mtr8g0900 522 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 48-LIKE ISOFORM X1 8 522 - -
Mtr8g0900 522 ProSiteProfiles Trp-Asp (WD) repeats profile. 353 393 IPR001680 GO:0005515
Mtr8g0900 522 SMART c3hfinal6 15 38 IPR000571 GO:0046872
Mtr8g0900 522 SMART c3hfinal6 189 215 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0900 Mtr-Chr8 11093988 11097833 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g0900 188 435 Eukaryotic Initiation Factors Gene Family AT2G46290 23.529 1.54e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0900 - - mtr:MTR_8g028700 1083.55