Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0898 ATGGTATCTATAAACCCTAATCCAACACCACAAGGTTTCTACTTCTTCGATCCTTCAACTATGGCTCTTCCCGGTGTTAACAATCTTCCTCCACCACCTCCGCCGCCATCTACTACCGCCGCCGCAGCATCTACCGTTCCTGAGGATCCTAATAAGAAGATCCGGAAACCATATACGATTACTAAATCTAGAGAGAGTTGGACTGATCAGGAGCATGATAAGTTTCTAGAAGCTCTTCAATTATTCGATCGTGATTGGAAGAAGATCGAAGCCTTTGTTGGTTCAAAAACAGTTATCCAGATACGAAGTCATGCACAGAAGTATTTTCTCAAAGTTCAGAAGAGTGGAACAAGTGAACATGTACCTCCTCCTCGGCCAAAGAGAAAAGCTGCTCACCCATACCCTCAAAAAGCTCCCAAAAACGCTCCTACTGCATCCCCCCAAGTCATGGGGACATTGCAACCTTCATCTGCTTTTGTTGACCCAACTTACATTTATAGCACAGATTCATCATCTGTGCTTGGTACACCAGTTACTAATCTGCCTTTATCATCTCTGAATTTTAATGCTCCACCGCCAGCCAGTTTGCCTCAAGTGACTACAGATGACACGGGATGGACTGGATCTGGACAAGCCGTTCCTGTTAATTGTTGCTATAGCAGCAGCAATGAGAAGCAAAGTAGTAAAGGGATTAATGAAGGCAACACGGGCAAGCCTGTTAAAGTCATGCCAGATTTTGCTCAAGTATACCGCTTCATTGGCAGTGTATTTGATCCAAATTCAACCAATCAACTACAGAGGCTAAAACAGATGGACCCAATAAATGTTGAAACGTCACTTTTGTTGATGAGAAACCTCTCCATTAATTTAACGAGTCCTGAATTTGAGGATCATAAGAGGCTACTGTCATCATATGATCCCGACTGCGAGAAGGCAAAGTTTGCTAATCCAAGCAGCAAATCCATGACTGTTAAATCCGAAAATGCCGTTCTGTCTACTTAG 1002 0.4331 MVSINPNPTPQGFYFFDPSTMALPGVNNLPPPPPPPSTTAAAASTVPEDPNKKIRKPYTITKSRESWTDQEHDKFLEALQLFDRDWKKIEAFVGSKTVIQIRSHAQKYFLKVQKSGTSEHVPPPRPKRKAAHPYPQKAPKNAPTASPQVMGTLQPSSAFVDPTYIYSTDSSSVLGTPVTNLPLSSLNFNAPPPASLPQVTTDDTGWTGSGQAVPVNCCYSSSNEKQSSKGINEGNTGKPVKVMPDFAQVYRFIGSVFDPNSTNQLQRLKQMDPINVETSLLLMRNLSINLTSPEFEDHKRLLSSYDPDCEKAKFANPSSKSMTVKSENAVLST* 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0898 333 PANTHER MYB TRANSCRIPTION FACTOR 2 328 - -
Mtr8g0898 333 MobiDBLite consensus disorder prediction 25 40 - -
Mtr8g0898 333 Pfam Myb-like DNA-binding domain 64 109 IPR001005 -
Mtr8g0898 333 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 59 113 IPR017930 -
Mtr8g0898 333 SMART sant 63 111 IPR001005 -
Mtr8g0898 333 Gene3D - 67 114 - -
Mtr8g0898 333 ProSiteProfiles Myb-like domain profile. 59 109 IPR001005 -
Mtr8g0898 333 ProSiteProfiles SANT domain profile. 62 113 IPR017884 -
Mtr8g0898 333 PANTHER SWI/SNF COMPLEX-RELATED 2 328 - -
Mtr8g0898 333 CDD SANT 66 109 IPR001005 -
Mtr8g0898 333 MobiDBLite consensus disorder prediction 114 148 - -
Mtr8g0898 333 MobiDBLite consensus disorder prediction 24 54 - -
Mtr8g0898 333 SUPERFAMILY Homeodomain-like 58 114 IPR009057 -
Mtr8g0898 333 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 62 111 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0898 Mtr-Chr8 11051348 11057871 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Mtr8g0898 Myb_DNA-binding 1.2e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0898 - - gmx:778090 488.419
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g0898 8 11051348 11057871 Mtr8g0898 8 11051348 11057871 ECH