Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0893 ATGGTCGACGATGGCGAATTCTCCGGCACCATTTGTTCAATCTGCTACGAACCTCTCAACCCCGTTAACGAAGATCTTCAATGCGTATCAATCTGCGGTCACGTCTTTCACGAACTCTGTTTACAGCAATGGTTTGAGTACTGTAAGACACCGAAGAAGCATACTTGTCCTATTTGCAAGCAAGGATGTAAGGCGAAAGATGCGTGTCGGCTTTATTTTCAATCAATTGGAGATGTGAAGGAAGGTGTTGTTACTCAGAAGAATGTTGGTCTTGAAGAAGATTCTGGTGTTTTGAGGAAGGAAGTTAAGAGATTGGAGGGAAAAGTTTCGGGGCTTAGTACGGTTTTGGAGAAACAAACTAAGGAGTTAGATGAACTTAAAGATGAGCTTTGTACTTGCAAGGAGCAGAAAAAGATAGAAATAGCATCAAAGATTGAAGCCTTGAAGCAAAAAACATCCTTACAATTCCAGCTTCATGTGAAATCAGAGGAGCTTGAGAAGTCAAATTTGGACCGTTTTAAATTGCAAGAGCGAAATATGGCTTTGGCTAAAGAACTTGCAGCATTAAAATTAGTGTCTGATCTGGACATTGGTGAAGACGAGGTTTTGAAGCTTGCCACTTTGGGTAATGGGACCAACAGTAAAGAAACAGTCGACACATTAACAAGATCTCTTGTCCTGCGGAACAGGAGTTACAAAGAGTTAATGACCAAGTGTAATCTTCTGGGGAGAGGTGAGGCTCGTTATAGTAAAAAGCTTGAGAAGGCTAATGAGAAGATTATTAAACTGAAGGCAAGGCTACAAGAACTGGAGACAACAATGGAAGTAAAAGAGAATGAATATTTGAAGCATCTAAAAGTTGCCAAGAATATTGAAAACAAAATCAATTCTAATTCTGATGTATTGATGGCTAACACATTTTCTTCAAAAGAGCAAAACAAACAAAGCACAACACCCAAATCTGGAATGGATTTGAATAAGAATGACAACAACAAATCTTTACAATCTCTGAAGATAGAGAACTCCAAAACAGCAAAAAATAAAGATGTGAATATTAGCAACAGAAGGAAAACTACCTTATCTCTTGATGAAGATATAGATTGCATCATTATTGATGAAGAAGAATACAAAGAGCCAGAAGCAGCATCTGGCACAAAGACTAAAACATCATTGCAAGGAATATGTAATTTGGCTGAGTCTTCAAGATTTGATATTGACACTGAAATGGCTGCCATTACTGCTGGCACTACGAATGAAGACGTGACTCTACAAGCTAATGCTAAACAAGCTCAACCCATGGTCAACATTAGAAAGGAGTCACCTTTAACAACTTCAAGTTCAGTGGACATCTGCTTTTCTGGTGGATTACTTGGTCCTGATGGAACTCAACGATTCTTGGGTAAATGGTGCAAACGTGGACAAACTGGTGAATCAACATCCACAAAAGGGAATTTGATATCTGTAGGAGCCGATGGTAGAGGTGGAACAGTCAAAGTTCTAAGGAATCCAAGCCAAGCCTTCTCGGATGGTAAGGAAACTTCAGTAGCTTCAAAAAGGTTGAAGCTTGGACCTAATAAAGCTAGTTCGCAATCCCGGGGATGCTTGCAGATGGAACACTTTTTTGGAAGGGCTGGGGTGGACCTTGTGGGTATGTATGTTTACCAGAATGCATACTTAGAGTTCTTCTGCTCGAAGGAAAAGCTGGATGCACTTATTGAGAAATCTAAGGATCGACCATTCCTAACTTATATGGCTATGAATAAAGAAGGGATATGGAAATCTAATGCCGGCCAAACCGATGTGAATGCTGTGACATGGGGGGTCTTCCCAGCTAAGGAAATAATACAACCAACCATTGTAGATCCTGCAGCTTCAACGTGTGGAAGGATGAGGCATTTGAAATTTGGTCAAGAGGATGGGCAAGCTTATACTCTGATGCTGATGCATCCAGGAAATTGGTTGAAGAGGTGGGCAGCAGCCACTTCTTGGTCAGCTTGGTGGACAACGATTACGTCAATGGTGATCTTTTTGGTCTGTTAG 2040 0.4064 MVDDGEFSGTICSICYEPLNPVNEDLQCVSICGHVFHELCLQQWFEYCKTPKKHTCPICKQGCKAKDACRLYFQSIGDVKEGVVTQKNVGLEEDSGVLRKEVKRLEGKVSGLSTVLEKQTKELDELKDELCTCKEQKKIEIASKIEALKQKTSLQFQLHVKSEELEKSNLDRFKLQERNMALAKELAALKLVSDLDIGEDEVLKLATLGNGTNSKETVDTLTRSLVLRNRSYKELMTKCNLLGRGEARYSKKLEKANEKIIKLKARLQELETTMEVKENEYLKHLKVAKNIENKINSNSDVLMANTFSSKEQNKQSTTPKSGMDLNKNDNNKSLQSLKIENSKTAKNKDVNISNRRKTTLSLDEDIDCIIIDEEEYKEPEAASGTKTKTSLQGICNLAESSRFDIDTEMAAITAGTTNEDVTLQANAKQAQPMVNIRKESPLTTSSSVDICFSGGLLGPDGTQRFLGKWCKRGQTGESTSTKGNLISVGADGRGGTVKVLRNPSQAFSDGKETSVASKRLKLGPNKASSQSRGCLQMEHFFGRAGVDLVGMYVYQNAYLEFFCSKEKLDALIEKSKDRPFLTYMAMNKEGIWKSNAGQTDVNAVTWGVFPAKEIIQPTIVDPAASTCGRMRHLKFGQEDGQAYTLMLMHPGNWLKRWAAATSWSAWWTTITSMVIFLVC* 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0893 679 CDD RING-H2 12 60 - -
Mtr8g0893 679 SMART ring_2 12 59 IPR001841 -
Mtr8g0893 679 ProSiteProfiles Zinc finger RING-type profile. 12 60 IPR001841 -
Mtr8g0893 679 Coils Coil 246 280 - -
Mtr8g0893 679 SUPERFAMILY RING/U-box 8 65 - -
Mtr8g0893 679 MobiDBLite consensus disorder prediction 308 341 - -
Mtr8g0893 679 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 8 178 IPR013083 -
Mtr8g0893 679 PANTHER RING ZINC FINGER PROTEIN-RELATED 1 544 - -
Mtr8g0893 679 Pfam Ring finger domain 11 60 IPR001841 -
Mtr8g0893 679 Coils Coil 109 129 - -
Mtr8g0893 679 MobiDBLite consensus disorder prediction 308 345 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0893 Mtr-Chr8 10987816 10996361 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g0893 1 543 C3H Transcription Factor Family AT4G01270 43.165 7.22e-125 378
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0893 K11985 - gmx:100812811 696.041
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g0893 8 10987816 10996361 Mtr8g0893 8 10987816 10996361 ECH