Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0888 ATGGAGCCTGCATCCTCCAAATGTGTAGAAAAAGCTGTTGATTTTGTGTTGTACCTGACTATTCGGCATGTGGGTTACATCTTCTATTACAAGGAAAATGTTAGTGAACTAAACAGTCTAGTTGAGAAGCTAATTCTTGAAAGAGAGAGCCTGGAACATCGAGTAGATAAAGCTGAGGATAATCTAGGAATAACCGAAAGTAATGTTGCAACTTGGCTTCAGAAAGTGGATAAAACTAGAACTGAAACGGAGAAGTTTCAAGATGATAAAGGCCATGCGAAGACAAGGTTTTCCAGTGGTTTATTTCATTACTTGAGGAACAGACATAGACTAGGGAGAAAAGCAAAGAAGATGGCAGTGGATGTCAAGTTATTAATAGACGAGAAGTTTGATGGAGTTTCCTATCAGCAAAAGCCAACATCTATGCATGTTGCTTTGTTTAATGATGGCTATGTAGAATTTGCTTCTAGAAAAGATACAATTAAAAGCATAATGGAAAAACTAGAAGATTCTACAGTGAGAATGATTGGAGTGCATGGGCCAGGTGGTGTGGGTAAGAGCACTTTAATCAAAGAAATTGTTAAGAAAGCTCAAGTCAAGAAGTTGTTCAGTATGGTAGTTATAGTAGAAATAACTAACAATCCCAACCTGCGAAAAATCCAGGAAGAAATTGCGTACGTGTTAGGATTGAATTTGGAAGGGGAAGGTGAGACTGTGAGAGCAGATCGTCTAAGAAGGAGGTTAAAGAAAGAGAGGAAGAACACCCTTGTCGTCCTGGATGACCTTTGGGACAGAATAGACTTGAATAAGATAGGGATTCCATTTGACGATGATTCAAGCCGTCTGGCAAAAGGAAAATCACCTGGTGATTATAATAGGGATGATGATTCAAGCCGTCTGAAAATTCAAGACATGAAAGGCTCTAACTTCACAATGGTGAAAAAAGGAAAATCTCCTGGTGATTATAATGGGTGCAAAATTTTGCTAACTTCGAGAGATAAAAAAGTATTGTCTGATAAAATGGACGTCGAGTCAGTTTTCTATGTGGGGGAATTAAACGGTGCAGAATCTCTAATGTTGTTTAAGGAGGAGGCTGGAATACATGATGAAATGTTCAATTTTAAACAGGATATTGTTAAGTATTGTGCAGGGATACCCATGGCAATTGTTACTGTTGGAAGGGCATTAAGAAAAAAGAGTGAGTCAATGTGGGAAGCCACACTTGAAAAACTTAAAAAAGAGGAACTGAGTGGAGTGCAGAAATCTATGGAGATTTATGTGAAGATGAGTTATGATCATCTAGAAAGTGAGGAGCTCCGGTCCATTTTCTTACTTTGTGCTCAAATGGGTCATCAACAATTAATTATGGACTTGGTGAAGTATTGCTTTGGATTGGGTATACTTGAAGGGGTCTATACGCTAAGAGAAGCCCGTGATAGAGTATATACATCAATTCAAAAGCTAAAAGACTCGAGTTTGATGTCGGATGGTAGTTCCAGTGATCATTTCAATATGCATGATATGGCTCAAGATGCCGCTTTGTCTATAGCACACAAGGAGAAAAATGTATTTGCTTTGAGAAATGGCAAATTAGATGACTGGCCGGACAAAGATATACTTGGGAGGTGCACTGTTATCTCTATACGCAACTGTGAAATCATTGACGAGCTTCCTAAATTCATACATTGTCCTCAACTTAAATTCTTCCAAATCGACAACGATGATCCTTCTTTGAAAATACCTGAGAATTTTTTGAAGGAATGGAAAAACTCAGAGTTAACTGATTACAAAATTGTGATTGGAGACTTCAAGATGCTTTCAGTTGGAGATTTCAGGATGCCAAATAAGTACAAAACATTAAGATCTTTGGCATTGCAGCTAATAGACGGCACTGACATTCACTCTCAGAAAGGGATAAAGTTGTTGTTTAAAGGAGTTGAAAATTTGTTGTTGGGAGAGCTAAATGGTGTTCAAAATGTTTTTTATGAGTTGAATTTGGATGGATTTCCAGATCTTAAAAATTTATCCATCATAAATAACAATGGCATTGAATATATCGTTAACTCGATTGAACTGCTCAATCCTCAGAATGTTTTTCTCAATTTGGAATCTCTATGCCTCTACAAACTGAGGAAGATAAAGATGCTGTGTTATACTCCAGTTACAGATGCCTCATTTGCCAAATTAAAAACCATCAAGGTCAAGATGTGTACCCAGATGAAGACTCTCTTCTCCTTTTACATGGTTAAATTTCTTGCTAGTCTAGAAACAATTGATGTTTCTGAATGTGATTCTTTGAAGGAGATTGTTGCTAAGGAAGGAAAAGAAGATTTTAATAAGGTTGAGTTTCATAAGCTACGCTCTTTGACACTATAA 2376 0.3725 MEPASSKCVEKAVDFVLYLTIRHVGYIFYYKENVSELNSLVEKLILERESLEHRVDKAEDNLGITESNVATWLQKVDKTRTETEKFQDDKGHAKTRFSSGLFHYLRNRHRLGRKAKKMAVDVKLLIDEKFDGVSYQQKPTSMHVALFNDGYVEFASRKDTIKSIMEKLEDSTVRMIGVHGPGGVGKSTLIKEIVKKAQVKKLFSMVVIVEITNNPNLRKIQEEIAYVLGLNLEGEGETVRADRLRRRLKKERKNTLVVLDDLWDRIDLNKIGIPFDDDSSRLAKGKSPGDYNRDDDSSRLKIQDMKGSNFTMVKKGKSPGDYNGCKILLTSRDKKVLSDKMDVESVFYVGELNGAESLMLFKEEAGIHDEMFNFKQDIVKYCAGIPMAIVTVGRALRKKSESMWEATLEKLKKEELSGVQKSMEIYVKMSYDHLESEELRSIFLLCAQMGHQQLIMDLVKYCFGLGILEGVYTLREARDRVYTSIQKLKDSSLMSDGSSSDHFNMHDMAQDAALSIAHKEKNVFALRNGKLDDWPDKDILGRCTVISIRNCEIIDELPKFIHCPQLKFFQIDNDDPSLKIPENFLKEWKNSELTDYKIVIGDFKMLSVGDFRMPNKYKTLRSLALQLIDGTDIHSQKGIKLLFKGVENLLLGELNGVQNVFYELNLDGFPDLKNLSIINNNGIEYIVNSIELLNPQNVFLNLESLCLYKLRKIKMLCYTPVTDASFAKLKTIKVKMCTQMKTLFSFYMVKFLASLETIDVSECDSLKEIVAKEGKEDFNKVEFHKLRSLTL* 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0888 791 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 145 446 IPR027417 -
Mtr8g0888 791 SUPERFAMILY L domain-like 528 770 - -
Mtr8g0888 791 Pfam NB-ARC domain 321 427 IPR002182 GO:0043531
Mtr8g0888 791 Pfam NB-ARC domain 158 282 IPR002182 GO:0043531
Mtr8g0888 791 Gene3D - 140 346 IPR027417 -
Mtr8g0888 791 Gene3D - 351 435 IPR042197 -
Mtr8g0888 791 PRINTS Disease resistance protein signature 175 190 - -
Mtr8g0888 791 PRINTS Disease resistance protein signature 249 263 - -
Mtr8g0888 791 PRINTS Disease resistance protein signature 382 396 - -
Mtr8g0888 791 PRINTS Disease resistance protein signature 750 766 - -
Mtr8g0888 791 PANTHER - 590 782 - -
Mtr8g0888 791 PANTHER - 1 574 - -
Mtr8g0888 791 PANTHER RPP4C4 590 782 - -
Mtr8g0888 791 PANTHER RPP4C4 1 574 - -
Mtr8g0888 791 Gene3D Ribonuclease Inhibitor 522 791 IPR032675 -
Mtr8g0888 791 SMART AAA_5 172 351 IPR003593 -
Mtr8g0888 791 Coils Coil 34 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0888 Mtr-Chr8 10923098 10935144 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g0888 173 486 WRKY Transcription Factor Family AT5G45050 26.706 4.32e-08 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0888 - - mtr:MTR_8g028520 1153.27