Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0882 ATGTCTTCCTCAACCCCTTTTTCTCCACCACCACAAATCCCTTACCTCACCAACCTTGGCTTTGGCTACTCCATAGCCATAGCTCTTGGCTTCCTCTTCCTTCTTTCAACTCTCATCCTTTCATCTTACCTCTGTTGCCGCACTTTCCGCAACCGTAACAACCACCTGAATGGCAACAATCAGCTAAACCATAACCATGACGGTGTAGTTTTACCGCGGGTTATTTTTGTAGCAGAAGACGAAGAAGATCGTGAAGATGTTGTTTTGGGTTTGGACCAGAACGTGATAAATTCTTATCCGAGGTTACAGTATTGTAAAGATTTGGGACATGACAGCACGTGTTCGATCTGTTTGTGTGAGTACAAGGATTCGGAGATGTTAAGGATGATGCCGGAATGTAGACACTATTTTCACCTATGTTGTCTTGATTCGTGGTTGAAACTTAACGGTTCTTGTCCCGTTTGTCGGAACTCACCTATGCCAACGCCGTTATCTACTCCGTTACAAGAAGTTGTTCCACTTTCTCATTACATTGGTGAAAGGAGGACTAGGAGGTAG 558 0.4427 MSSSTPFSPPPQIPYLTNLGFGYSIAIALGFLFLLSTLILSSYLCCRTFRNRNNHLNGNNQLNHNHDGVVLPRVIFVAEDEEDREDVVLGLDQNVINSYPRLQYCKDLGHDSTCSICLCEYKDSEMLRMMPECRHYFHLCCLDSWLKLNGSCPVCRNSPMPTPLSTPLQEVVPLSHYIGERRTRR* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0882 185 SUPERFAMILY RING/U-box 96 161 - -
Mtr8g0882 185 SMART ring_2 114 155 IPR001841 -
Mtr8g0882 185 Pfam Ring finger domain 113 156 IPR001841 -
Mtr8g0882 185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 161 IPR013083 -
Mtr8g0882 185 ProSiteProfiles Zinc finger RING-type profile. 114 156 IPR001841 -
Mtr8g0882 185 PANTHER RING-H2 FINGER PROTEIN ATL67 11 183 IPR044289 GO:0016567|GO:0016740
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0882 Mtr-Chr8 10868025 10869063 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g0882 5 178 C3H Transcription Factor Family AT5G07040 38.202 8.45e-36 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0882 - - vra:106773185 264.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g0882 8 10868025 10869063 Mtr8g0882 8 10868025 10869063 ECH
Mtr7g2060 7 36841456 36842441 Mtr8g0882 8 10868025 10869063 PCT