Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0839 ATGACTGCAAATAGTGGGAGAGGAACTGAAGAGCATAAGAGGAAAATCAATGACCCTTTACCAAGGTCACCTAGATTATGCACACCTATTAGGAAGGAAAATGTGATTGGTAATGAGAATAATATTTTAACTAGAAATTTTGCTTCCTTAGCTGGATCTGGACCTCCTAGTACTAGTTTTTGTTCCACCACAGATCCTAAACACATTGTTGAAAAATTACATGTTAGGAATAATAAGAACTTGAATGTGGCTTTAGGTATCCCTCCACATAATTTTAGACAGCATCAGAGAAATCAATTAGCTATTGAGTCTAAGTATAATAATAGCTTGAGTAGAAAAATTGCACAGAAATCACTCAGATTAAGCAAAGGACAAAAGGGAATTGATTCTAGAAAGAACTTGAATCATGAACAATATAAGGCTTTTGCTAATATAGGCAATATGGATAATACACATTTTGTTAGCAGTAAAATGCAAAGTTCTTCTGCTACATCTAGTTATCCTCAATTGTTAGGAGAGAAAACAGTGAAGGGAAAGGGAATTCTTCATAATGTGATGTCTGGCGCAGAATGTTTTAACGATGGACTCAACTTAAGAGCGTGGATGAAGTCTGAAAGTCATAAAGTGAAGAAATCAGAAAGGCTGTATATATTTAAACAGATTTTGGAATTGGTTGATTTTGCACACTCTCAAGGATTTGTCTTGGAAGACATAAAACCATCTTGTTTCGTCTTATCGCCTTTGAATAAAATTAAATACATTGGTTCATATAGCCAACATGTGTTTGATGACCAAAAATCATGTTTCACCGTATTTAAGTCATGCCTTAAGGCTATCATGACCTGCAACGGAACAAGGAAAATGCCTTGGGAACAAGATAACTGTGCTTGCCAAAATTTGAGTGCAAAGAAGCAAAAGCTATGTGAAGAGAAAACATCTCTTAAGGAGCAGCATCACTTCAACTGTATTCATGGCTGTGACACAAAAATGGACATGGAAACAAGGGTTAATAAAGAAAGGTTGTGGCTTGACGATTCGAGTTATCAACATGCTTTTGCAGAAGAAAAACAGTTTATTTCTGAAACAATTGAGTTTGAAGAGAAATGGTATTCTTGTCCAGAAGTGCTCAATGAGGAAGCTTGTACATTTTCATCAAATGTTTATAGCCTTGGAGTTCTTCTTTTTGAGTTGCTGTGCAATATTGAGTCATTGGAAGCACATTCAACTGTGATGTTTGATATGCGTCATAGAATCTTACCGCCAAAATTTCTATCACAAAATGCAAAGGACGCTGGTTTTTGTCTATGGCTTCTGCACCCTGAACCGTCTTCTCGTCCCAATACCAGGATGATTTTAGAATCTGAATTTATACGCGAATTAGAGGCATCAAACTCTGGTGATAATAATGTTATAGTATCTGAAGACGATGTAGCTGACACACAGGAATTACTGCATTTTCTAATTTCAGTTGAAGAAGAAAAGAAAAAACAGGAAGCTAAATTGGCAGAAGAGCTACATTGTTTGAACGAAGATATTAAGGAGGTAGAAGGAAATCATTCGTATGGAAGTGATTCAGCATTTCCATCGTCACAATTGAACTATCTACCTTATCATGATTCTTCCAGTAAAATTATTAGTAGATCTTTTCCAAGTTCATTTGTTGATGAAGCAAAATTTATGAATAACATAAGTCAGCTAGAGAATAGTTACTTCTCCATGAGATTCCAAGGCCCGCTCAAGGAAGCTGCAGCCGCCAAAAGCAGTGATAAAAGTGTGATGGAAACCAGATGGAGATTGCCTCATTTAGAGAATGTTGGTAATGGGCCAAAGAGAATTCAAGGTTCTATTGGTTGTCTAGGACCTTTCTATGAAGGTATATGCAAATTCGCTCGTTACAGCAAGTTTGAAGAGCGCGGAACATTGAGAAACAGTGATCTTCTTAGTTCTGCCAATGTGATATGTGCCTTAAGTTTTGACCGTGATGAAGACTACATTGCAGCCGGTGGAATTTCAAAGAAAATAAAGATATTTGACCTTAATGCTATTTCAAGTGATTCTACAGACATTCAGTACCCCGTTGTCGAGATGTCAAACAAATCAAAGCTCAGTTGTGTGTGCTGGAACAGTTATATAAAAAACCATCTGGCATCTACTGATTATGATGGTGTGGTTCAGATGTGGGATGCAGGCACTGGTCAGCCACTGTCTCAATACATGGAGCACCAAAAGAGAGCTTGGTCTGTTCACTTTTCGGCGTCCGACCCAAAAATGTTTGCCAGTGGAAGTGATGACTGTTCTGTCAAACTATGGAATATCAGCGAGAGAAATTCTATAGGAACCATAATGAGTCCGGCAAATGTATGTTGTGTTCAGTTCTCTGAATACTCCACAAATCTTTTATTTTTTGGATCGGCTGATTACAAGGTGTACGGTTATGATCTTCGTAACACTAAAATTCCTTGGTGTACGTTACCTGGTCATGGAAAAGCTGTTAGCTATGTAAAATTTATAGATGCACAAACAGTTGTGTCTGCTTCCACTGATAACTCTTTGAAGTTATGGGACTTAAAGAAAACTAGTTCAGCCGAGTTGTCATCTGATGCTTGTGACTTAACCTTTAGAGGTCATAGTAATGGAAAGAATTTCGTTGGTTTATCTGTTTTGGATGGATACATTGCATGTGGTTCAGAATCTAATGAGGTTTACTGTTATCACAAATCTCTACCAGTGCCAATGGCTTCTCACAAATTCGAGTCAATCGATCCCATTTCTGGTCATTCAAACAGTAATGATAACAATGGACAATTTGTTTCTAGTGTCTGCTGGAGGAAGAAGTCTAACATGCTTGTTGCAGCCAACTCAGTTGGAATTGTGAAACTACTTCAGATGGTGTGA 2895 0.3751 MTANSGRGTEEHKRKINDPLPRSPRLCTPIRKENVIGNENNILTRNFASLAGSGPPSTSFCSTTDPKHIVEKLHVRNNKNLNVALGIPPHNFRQHQRNQLAIESKYNNSLSRKIAQKSLRLSKGQKGIDSRKNLNHEQYKAFANIGNMDNTHFVSSKMQSSSATSSYPQLLGEKTVKGKGILHNVMSGAECFNDGLNLRAWMKSESHKVKKSERLYIFKQILELVDFAHSQGFVLEDIKPSCFVLSPLNKIKYIGSYSQHVFDDQKSCFTVFKSCLKAIMTCNGTRKMPWEQDNCACQNLSAKKQKLCEEKTSLKEQHHFNCIHGCDTKMDMETRVNKERLWLDDSSYQHAFAEEKQFISETIEFEEKWYSCPEVLNEEACTFSSNVYSLGVLLFELLCNIESLEAHSTVMFDMRHRILPPKFLSQNAKDAGFCLWLLHPEPSSRPNTRMILESEFIRELEASNSGDNNVIVSEDDVADTQELLHFLISVEEEKKKQEAKLAEELHCLNEDIKEVEGNHSYGSDSAFPSSQLNYLPYHDSSSKIISRSFPSSFVDEAKFMNNISQLENSYFSMRFQGPLKEAAAAKSSDKSVMETRWRLPHLENVGNGPKRIQGSIGCLGPFYEGICKFARYSKFEERGTLRNSDLLSSANVICALSFDRDEDYIAAGGISKKIKIFDLNAISSDSTDIQYPVVEMSNKSKLSCVCWNSYIKNHLASTDYDGVVQMWDAGTGQPLSQYMEHQKRAWSVHFSASDPKMFASGSDDCSVKLWNISERNSIGTIMSPANVCCVQFSEYSTNLLFFGSADYKVYGYDLRNTKIPWCTLPGHGKAVSYVKFIDAQTVVSASTDNSLKLWDLKKTSSAELSSDACDLTFRGHSNGKNFVGLSVLDGYIACGSESNEVYCYHKSLPVPMASHKFESIDPISGHSNSNDNNGQFVSSVCWRKKSNMLVAANSVGIVKLLQMV* 965
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0839 964 Gene3D - 623 964 IPR015943 GO:0005515
Mtr8g0839 964 PANTHER PROTEIN SPA1-RELATED 2 2 193 IPR044630 GO:0009640
Mtr8g0839 964 PANTHER PROTEIN SPA1-RELATED 2 193 964 IPR044630 GO:0009640
Mtr8g0839 964 ProSiteProfiles Trp-Asp (WD) repeats profile. 738 780 IPR001680 GO:0005515
Mtr8g0839 964 Coils Coil 491 518 - -
Mtr8g0839 964 SUPERFAMILY WD40 repeat-like 651 961 IPR036322 GO:0005515
Mtr8g0839 964 SMART serkin_6 100 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr8g0839 964 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 824 857 - -
Mtr8g0839 964 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 738 773 - -
Mtr8g0839 964 Pfam WD domain, G-beta repeat 823 855 IPR001680 GO:0005515
Mtr8g0839 964 Pfam WD domain, G-beta repeat 732 771 IPR001680 GO:0005515
Mtr8g0839 964 Gene3D Transferase(Phosphotransferase) domain 1 194 470 - -
Mtr8g0839 964 ProSitePatterns Trp-Asp (WD) repeats signature. 842 856 IPR019775 -
Mtr8g0839 964 ProSiteProfiles Trp-Asp (WD) repeats profile. 824 864 IPR001680 GO:0005515
Mtr8g0839 964 SUPERFAMILY Protein kinase-like (PK-like) 195 461 IPR011009 -
Mtr8g0839 964 SMART WD40_4 643 678 IPR001680 GO:0005515
Mtr8g0839 964 SMART WD40_4 916 962 IPR001680 GO:0005515
Mtr8g0839 964 SMART WD40_4 817 855 IPR001680 GO:0005515
Mtr8g0839 964 SMART WD40_4 774 813 IPR001680 GO:0005515
Mtr8g0839 964 SMART WD40_4 731 771 IPR001680 GO:0005515
Mtr8g0839 964 SMART WD40_4 866 905 IPR001680 GO:0005515
Mtr8g0839 964 SMART WD40_4 689 728 IPR001680 GO:0005515
Mtr8g0839 964 Coils Coil 297 317 - -
Mtr8g0839 964 MobiDBLite consensus disorder prediction 1 27 - -
Mtr8g0839 964 ProSiteProfiles Protein kinase domain profile. 45 457 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr8g0839 964 PANTHER LIGASE COP1, PUTATIVE-RELATED 193 964 - -
Mtr8g0839 964 PANTHER LIGASE COP1, PUTATIVE-RELATED 2 193 - -
Mtr8g0839 964 PRINTS G protein beta WD-40 repeat signature 715 729 IPR020472 -
Mtr8g0839 964 PRINTS G protein beta WD-40 repeat signature 758 772 IPR020472 -
Mtr8g0839 964 PRINTS G protein beta WD-40 repeat signature 842 856 IPR020472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0839 Mtr-Chr8 10366855 10371516 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g0839 735 919 Miscellaneous Gene Families AT5G08390 25.668 6.23e-09 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK PEK_PEK Mtr8g0839 WD40 0.0046 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0839 K16240 - gmx:100802144 1224.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g0839 8 10366855 10371516 Mtr8g0839 8 10366855 10371516 ECH