Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0838 ATGGATTCAGTATTCTCCACCATTCTCATCATTCTCGCTATTCTCTTCATCACCTTCATGCTTTCACTCATGCTCCGTTTCCTTCAACTCCGCATAAATCGCCGACGTCTCCTCTCCGATTCAACACCACCGCGATCACCACCACCATTGACGACGATTGTTACTGAGTCGCCTCCAGCTTCACTAAACATCGACTCACTCCCTCCGATTCCGTTCCATTTCACCTCCGATTCAACACCACCGTCGTCGCAACCACCTCAACCTGCGCCGGAAATACAACGAGCAATCGATTCACTTCCTACGTTTCATTTCTCCTCCATTTCCACGACCGCTACCGCCACTGCCGACTGTGCAGTTTGCCTTACCGCGTTCAGCACCACTGACCTCCTCCGCGCTCTCCCTAGGTGTTGTCACGCCTTTCACTCCGACTGTATTGACAATTGGCTCCGTTCTTCCAACCTCTCATGTTGTCCGCTTTGCCGTTCCACAATTTTCGCTTCAGAATCCGACCTCGCGGCGATTCTCCGATCACCTTCCGACAGTTTCCGAGTTGAAATTGGAAATGTGACTTATCCAGAAGCTGTCGGCGGAGACGCATTGTCATCATATTCCATTGGAGGATCATTCGATTATCGTGTAATGGAGGTATCGCAGGTTCCGGTGAGTGCAGTTTCATCGCGAACGGGGTCATTTCGTGGTTCTGGAAGGTTCTTCGGTGGAAGTAGTCGCAGAATCGAAGCTAACAGAATAGGTGAGGAGATTACCGAAATGTTTCGTTGGCTTTCAGGGGATTATTAG 798 0.5025 MDSVFSTILIILAILFITFMLSLMLRFLQLRINRRRLLSDSTPPRSPPPLTTIVTESPPASLNIDSLPPIPFHFTSDSTPPSSQPPQPAPEIQRAIDSLPTFHFSSISTTATATADCAVCLTAFSTTDLLRALPRCCHAFHSDCIDNWLRSSNLSCCPLCRSTIFASESDLAAILRSPSDSFRVEIGNVTYPEAVGGDALSSYSIGGSFDYRVMEVSQVPVSAVSSRTGSFRGSGRFFGGSSRRIEANRIGEEITEMFRWLSGDY* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0838 265 Pfam Ring finger domain 116 161 IPR001841 -
Mtr8g0838 265 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 2 229 - -
Mtr8g0838 265 SMART ring_2 117 160 IPR001841 -
Mtr8g0838 265 CDD mRING-H2-C3H2C2D_ZSWM2 117 161 - -
Mtr8g0838 265 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL4 2 229 - -
Mtr8g0838 265 SUPERFAMILY RING/U-box 97 167 - -
Mtr8g0838 265 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 80 165 IPR013083 -
Mtr8g0838 265 ProSiteProfiles Zinc finger RING-type profile. 117 161 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0838 Mtr-Chr8 10362305 10363102 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g0838 93 173 C3H Transcription Factor Family AT2G18650 50.000 6.57e-20 86.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0838 K10663 - rcu:8266662 142.51