Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0817 ATGCAGTCCGCCGCAGCCGAGACCATGAACCCTGCTGCTGTCCAGAGTGCGGCTGCCGAGAAGCACGGTAGGTCCCGGAAGAAGAAGAAGATGAATAATGTTAACACTTCTTCTTCTCCTTCTTCGGGGAAGAAAAGAAAAGGTGATGATGATGATTTGAGAATGGAAAAACCTAATAAGAAATCAAAAGGAAAGGTTCAGTTGAGTAATGATAATGAAGTGATAGCAGCAGCAGGAGAAAATTTGACGGTTGCTGGTGGTGGTGATGTTGGTTCTGGAAAGGTTGCTGTAACTGCTTCTTTTTTAAGTGATTCAAGATTCGACGAGTGTTCAGTCTCCCCACTGTCATTAAAAGGAGTCAAGGATGCGGGATATGAGAAAATGACTATTGTGCAGGAGGCAACACTTCCAGTAATTCTAGAAGGTAAGGATGTCCTGGCCAAAGCTAAAACAGGCACGGGAAAAACAGTAGCCTTTTTGCTTCCATCAATTGAAGTTGTTGTGAAGTCTCCACCAAGTGATCCTGGCCAAAGTCAAACACCAATTCTTGTTCTTGTTGTATGCCCAACTCGAGAGCTTGCACGCCAAGCTGCTGCAGAAGCCACTAAACTTCTCAAGTATCATCCTACTATTGGTGCTCAAGTTGTGATTGGAGGAACAAAGATTGTTTCAGAACAGAAACGCATCCAAAAAAATCCTTGCCAGATCCTTGTTGCTACCCCTGGAAGGCTTAAAGATCATATTGCTAAAACTGCTGGTTTTGCATCTAACCTTATGGGGTTGAAGACCTTTGTGATTGATGAAGCTGATCGGTTACTAGACATGGGATTTCGCAAAGATATTGAGGAAATAATCACTTCAGTCCCTAAACAACGACAAACACTTATGTTTTCTGCAACCATTCCGAAAGCGGTGCATCAAGTCTGTAATGTTGCTTTGAAAAAGGATTATGAATTTATTAATACAGTTCAGGAGGGTACAGAGGAGACACATTCACAGGTCCGCCAGATGCATTTAATTGCCCCACTAGACAAACATTTCTCTTTACTCTCTGTTATTCTGAAGGAGCACATTGCTGATGAAGTTGACTATAAGGTTCTTGTTTTCTGCACAACTGCTATGGTCACAAGCCTTGTTGCTAGTCTCCTTGGGAAGTTGGATTTGAATGTGAGAGAAATCTATTCAAGAAAGAAACAGGGTTTTAGAAATAGAGTTTCTGACGAATTCCGGAAGTCAAAGAGGCTCATACTGGTTACTTCAGATGTATCTGCACGTGGAGTTGATTATCCAGATGTTTCTCTTGTTGTACAGCTTGGCATTCCGGCTGATAAAGAACTGTATATACATCGACTAGGTAGAACGGGGCGAATAGGAAAAGAAGGGAAGGGCATACTGCTACTAGCTCCGTGGGAAGAGTTCTTTTTAGCTTCCACAAAAGATTTACCTATTGAGAAAGCTCCAGTACCTTCAGTTGATCCCGACACTGAGAAAAAGGTGGAAATGACTCTATCCAATGTGAAGATGCGGTTTAAAAAACCTGCATATAAGTCATTGCTTGGTTACTACAGTACTCACGAGAAATGTGAGAAATTTAAGAAGAAATTTGGGGAGCTTGCAAACGAGTTGAGTCGATGCATGGGACTTGATACTCCTCCAGCTGTTTCTAGGCTTTTGCTTAGCAAGTGGGGTCTTGAAAATGTCCCTGGTTTATGTTCCAAATAG 1722 0.4222 MQSAAAETMNPAAVQSAAAEKHGRSRKKKKMNNVNTSSSPSSGKKRKGDDDDLRMEKPNKKSKGKVQLSNDNEVIAAAGENLTVAGGGDVGSGKVAVTASFLSDSRFDECSVSPLSLKGVKDAGYEKMTIVQEATLPVILEGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPSDPGQSQTPILVLVVCPTRELARQAAAEATKLLKYHPTIGAQVVIGGTKIVSEQKRIQKNPCQILVATPGRLKDHIAKTAGFASNLMGLKTFVIDEADRLLDMGFRKDIEEIITSVPKQRQTLMFSATIPKAVHQVCNVALKKDYEFINTVQEGTEETHSQVRQMHLIAPLDKHFSLLSVILKEHIADEVDYKVLVFCTTAMVTSLVASLLGKLDLNVREIYSRKKQGFRNRVSDEFRKSKRLILVTSDVSARGVDYPDVSLVVQLGIPADKELYIHRLGRTGRIGKEGKGILLLAPWEEFFLASTKDLPIEKAPVPSVDPDTEKKVEMTLSNVKMRFKKPAYKSLLGYYSTHEKCEKFKKKFGELANELSRCMGLDTPPAVSRLLLSKWGLENVPGLCSK* 574
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0817 573 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 105 133 IPR014014 GO:0003724
Mtr8g0817 573 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 136 319 IPR014001 -
Mtr8g0817 573 Pfam Helicase conserved C-terminal domain 355 458 IPR001650 -
Mtr8g0817 573 Gene3D - 328 553 IPR027417 -
Mtr8g0817 573 SMART helicmild6 377 458 IPR001650 -
Mtr8g0817 573 Gene3D - 91 320 IPR027417 -
Mtr8g0817 573 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 265 273 IPR000629 -
Mtr8g0817 573 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 182 473 IPR027417 -
Mtr8g0817 573 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 353 500 IPR001650 -
Mtr8g0817 573 CDD DEADc_MSS116 112 321 - -
Mtr8g0817 573 MobiDBLite consensus disorder prediction 43 67 - -
Mtr8g0817 573 PANTHER RNA HELICASE 71 570 - -
Mtr8g0817 573 MobiDBLite consensus disorder prediction 1 68 - -
Mtr8g0817 573 CDD SF2_C_DEAD 334 467 - -
Mtr8g0817 573 Pfam DEAD/DEAH box helicase 131 307 IPR011545 GO:0003676|GO:0005524
Mtr8g0817 573 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 25 71 570 - -
Mtr8g0817 573 SMART ultradead3 124 334 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0817 Mtr-Chr8 10149378 10156776 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g0817 105 486 Eukaryotic Initiation Factors Gene Family AT3G19760 27.665 4.65e-44 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0817 - - gmx:100795739 720.694