Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0816 ATGAGCCCTGCTGCTGTCCAGAGTGCGGCTGCCGACAAACACGGTAGGTCCCGATCACGGAAGAAGAAAAATAACGTTAACGGTTCTTCTTCTTCATTGGGGAAGAAAAGAAAAAGTGACGATGGTGATGATTTGAGAATGGAAAAACCTAATAAGAAGAACTCAAAAAGAAAGGTTCAGCTGAGTAATGATAATGATGATAACGAAGTGATAGCAGCAGAAGTAGGAAATTTGAAGGTTGTTAATGGTGGTGATGTTAGTTCTGGAATTGTTGGAGTAACTGCTTCTTATTTAAGTGATTCAAGATTTGACAAGTGTTCAGTCTCCCCACTGTCATTAAAAGGAGTCAAGGATGCGGGATATGAGAAAATGACTATTGTGCAGGAAGCAACACTTCCAGTAATTCTAAAAGGTAAGGATGTCCTGGCCAAGGCTAAAACCGGCACGGGAAAAACAGTGGCCTTTTTGCTTCCATCAATAGAAGTTGTTGTGAAGTCTCCACCAAATAATCGTGGTCAGAATCAAACACCAATTCTTGTTCTTGTTGTATGCCCAACTCGAGAGCTTGCATGTCAAGCTGCTGCAGAAGCCACTAAACTGCTTAAGTATCATCCCACCATTGGTGCTCAAGTTGTGATTGGAGGAACAAGTCTTAGTTCAGAACAGAAACGCATTCAAAAAAATCCTTGCCAGATCCTTATTGCTACTCCTGGAAGGCTTAAAGATCATATTGCTAATACTGCTGGTTTTGCATCTAAGCTTATGGGGGTGAAGGCCTTGGTGCTTGATGAAGCTGATCAGTTACTAGACATGGGATTCCGCAAAGATATTGAGAAAATAATCGCTTCAGTCCCTAAACAACGACAAACACTTATGTTTTCTGCAACCATTCCGGACGCGGTGCATCAAGTCTGTAATGTTGCTTTGAAAAAGGATTTTGAATTTATTAATACAGTTCAGGAGGGTACTGAGGAGACACATTCACAGGTCCGCCAGATGCATTTAATAGCCCCACTAGACAAACATTTCTCTTTACTCTCTGTTATTCTGAAGGAGCACATTGCCGATGATGTTGACTATAAGGTTCTTGTTTTCTGCACAACTGCTATGGTCACAAGCCTTGTTGCTAATCTCCTTGGGAAGTTGAATTTGAATGTGAGAGAAATCCATTCAAGAAAGAATCAGAGTTATAGAACTAGAGTTTCTGACGAATTCCGGAAGTCAAAGAGGCTCATCCTGGTTACTTCGGATGTATCTGCACGTGGAGTTGATTATCCCGATGTTTCTCTTGTTGTACAGGTTGGCCTTCCGGCTGATAAACAACAGTATATACATCGACTAGGTAGAACAGGGCGAAAAGGAAAAGAAGGGAAGGGCATACTGCTACTAGCTCCGTGGGAAGAGTTCTTTTTAGATTCCACAAAAGATTTACCTATTGAGAAAGCTCCAGTACCATCGGTTGATCCCGACACTAAGAAAAAGGTGGAAAGGGCTCTATCCAATGTGGAGATAGAGAGTAAAGCAAAAGCATATCAGGCATGGCTTGGTTACTACAATTCTAACAAGAAAATTGGGAAAGATAAGAAGAAATTAGTGGAGCTTGCAAATGAGTTCAGTCGATGCATGGGACTTGATACTCCTCCAGCTGTTTCTGGGCTTGTCCTTCGCAAGATGGGTCTTCAAAATGTCGCTGGTTTACGTTCCAAATAG 1710 0.4181 MSPAAVQSAAADKHGRSRSRKKKNNVNGSSSSLGKKRKSDDGDDLRMEKPNKKNSKRKVQLSNDNDDNEVIAAEVGNLKVVNGGDVSSGIVGVTASYLSDSRFDKCSVSPLSLKGVKDAGYEKMTIVQEATLPVILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPNNRGQNQTPILVLVVCPTRELACQAAAEATKLLKYHPTIGAQVVIGGTSLSSEQKRIQKNPCQILIATPGRLKDHIANTAGFASKLMGVKALVLDEADQLLDMGFRKDIEKIIASVPKQRQTLMFSATIPDAVHQVCNVALKKDFEFINTVQEGTEETHSQVRQMHLIAPLDKHFSLLSVILKEHIADDVDYKVLVFCTTAMVTSLVANLLGKLNLNVREIHSRKNQSYRTRVSDEFRKSKRLILVTSDVSARGVDYPDVSLVVQVGLPADKQQYIHRLGRTGRKGKEGKGILLLAPWEEFFLDSTKDLPIEKAPVPSVDPDTKKKVERALSNVEIESKAKAYQAWLGYYNSNKKIGKDKKKLVELANEFSRCMGLDTPPAVSGLVLRKMGLQNVAGLRSK* 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0816 569 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 132 315 IPR014001 -
Mtr8g0816 569 MobiDBLite consensus disorder prediction 1 65 - -
Mtr8g0816 569 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 101 129 IPR014014 GO:0003724
Mtr8g0816 569 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 25 69 567 - -
Mtr8g0816 569 MobiDBLite consensus disorder prediction 34 64 - -
Mtr8g0816 569 SMART ultradead3 120 330 IPR014001 -
Mtr8g0816 569 CDD DEADc_MSS116 108 317 - -
Mtr8g0816 569 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 350 496 IPR001650 -
Mtr8g0816 569 Pfam DEAD/DEAH box helicase 127 303 IPR011545 GO:0003676|GO:0005524
Mtr8g0816 569 CDD SF2_C_DEAD 330 463 - -
Mtr8g0816 569 SMART helicmild6 373 454 IPR001650 -
Mtr8g0816 569 PANTHER RNA HELICASE 69 567 - -
Mtr8g0816 569 Gene3D - 43 316 IPR027417 -
Mtr8g0816 569 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 469 IPR027417 -
Mtr8g0816 569 Pfam Helicase conserved C-terminal domain 353 454 IPR001650 -
Mtr8g0816 569 Gene3D - 324 546 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0816 Mtr-Chr8 10142929 10148281 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g0816 101 482 Eukaryotic Initiation Factors Gene Family AT3G19760 27.877 1.72e-44 161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0816 - - gmx:100795739 772.696
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr8g0816 8 10142929 10148281 Mtr8g0816 8 10142929 10148281 ECH