Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr8g0815 ATGACAAAACTATTCTTATCACAACTCCGTCTTCTTCAATTCCATCCAATGAAACTCCACTCTCTCTCCCTCTTCAAACTCTCTCACATCCCACTCCGCAACGCTGCGTTTCATCCTCGCCCTTTTTCTGTCCGTCCAGATAGAATCAGGGCTTCCAAAAGCCTCGTCGACGACGAGGCTGACCTTAGTAATTGGGTTGATGATTTGCGTACTGGCCGCGCCGAGACATTGAAACCTGCCCAGAGAGTAGGTTCCAGAGAACCCGCTGTCAGAGACGGCGGGTTCCGGAAGAGAAGAGGTGGTGGTGATTTTAAGAAGGGGAAACCTAATTTGGATGCAAAAACAAGGTTTGGATTGAGTAGTGATAGTGATAATGATGAAGTTGTTGAAAGAGGGAAGTTTAAGGATGCTGGCGGTTCTGGAAGTATTGGTGAGTTTCTTAGTGAAGATGATGTTGATGAAGAAGAGAGTGATATTGATGATGAGGATGAGGAGATAGTTAACAAGAGTAGAAGTGTTTTGTTTGGTAAACAAAATGGGGTTTCAAATACTACTAGACCTGCTTCATCTGGTGGAAGTGATTCTTATTTAAGCGATTCTAGATTTGATCAGTGTTCAGTTTCTCCACTGTCATTAAAAGGAATCAAGGATGCTGGATATGAGAAAATGACTGTTGTGCAGGAGGCAACACTTCCAGTAATTCTAAAAGGTAAGGATGTCCTGGCCAAGGCTAAAACAGGCACGGGAAAAACAGTAGCCTTTTTGCTTCCATCAATTGAAGTTGTTGTGAAGTCTCCACCAAGTGATCGTGATCAAAGGCGTCCGCCAATTTTTGTTCTTGTCATATGCCCAACTCGAGAGCTTGCATGTCAAGCTGCTGCAGAAGCCACTAAACTGCTCAAGTATCATCCTACCATTGGTGTTCAAGTTGTGATTGGAGGAACAAGACTTGCTTTAGAACAGAAACGAATGCAAGCAAATCCTTGCCAGATCCTTGTTGCTACACCTGGAAGGCTTAGAGATCATATTGAAAATACTGCTGGTTTTGCATCTAGGCTTATGGGGGTGAAGTCCTTGGTGCTCGATGAAGCTGATCATTTACTAGACATGGGATTTCGCAAAGATATTGAGAAAATAATTGCAGCAATCCCTAAACAACGACAAACACTTATGTTTTCTGCAACAATTCCGGACGAGGTGCGTCAAGTCTGCCATGTTGCTCTGAAAAGGGACTTTGAATATATTAATACAGTTCAGGAGGGCTCGGAGGATACTCATTCACAGGTCCGCCAAATGCATTTAGTTGCACCATTAGACAAGCATTTCCCTTTACTCTATGCTATTCTGAAGGAGCACATTGCAGATGATGTTGACTATAAGGTTCTTGTTTTCTGCACAACTGCTATGGTCACAAGACTTGTTGCTGATCTCCTTGGGGAGTTGAACTTGAATGTGAGAGAAATCCATTCAAGAAAGCCACAGAGTTATAGAACCAGAGTTTCTGATGAATTCCGGAAGTCAAAGGGTCTCATCCTGGTTACTTCTGATGTATCCGCACGTGGAGTTGATTATCCAGATGTTACTCTTGTTGTACAGGTTGGCCTTCCGGCTGATAAACAACAGTATATACATCGACTAGGTAGAACTGGGCGAAAAGGAAAAGAAGGGCAGGGCATACTGCTACTAGCTCCTTGGGAAGAGTTCTTTTTAGCTACAGCAAAAGATTTGCCTATTGTGAAAGCTCCAGTACCGTTAGTTGATCCTGACACGAAGAAAAAGGTGGAAAGGGCTCTATCGAATGTGGAGATGAAGAATAAAGAAGCAGCATATCAGGCATGGCTTGGTTACTACAATTCTAACAAGAAAGTTGGGAAAGATAAGTATAGGTTAGTGGAGCTTGCAAATGAGTTTAGTCGATGCATGGGGCTTGATAACCCTCCAGCTATTCCTAAACTTGTCCTTGGCAAGATGGGTCTTAAAAATGTCCCTGGATTACGTTCCAAATAG 2007 0.431 MTKLFLSQLRLLQFHPMKLHSLSLFKLSHIPLRNAAFHPRPFSVRPDRIRASKSLVDDEADLSNWVDDLRTGRAETLKPAQRVGSREPAVRDGGFRKRRGGGDFKKGKPNLDAKTRFGLSSDSDNDEVVERGKFKDAGGSGSIGEFLSEDDVDEEESDIDDEDEEIVNKSRSVLFGKQNGVSNTTRPASSGGSDSYLSDSRFDQCSVSPLSLKGIKDAGYEKMTVVQEATLPVILKGKDVLAKAKTGTGKTVAFLLPSIEVVVKSPPSDRDQRRPPIFVLVICPTRELACQAAAEATKLLKYHPTIGVQVVIGGTRLALEQKRMQANPCQILVATPGRLRDHIENTAGFASRLMGVKSLVLDEADHLLDMGFRKDIEKIIAAIPKQRQTLMFSATIPDEVRQVCHVALKRDFEYINTVQEGSEDTHSQVRQMHLVAPLDKHFPLLYAILKEHIADDVDYKVLVFCTTAMVTRLVADLLGELNLNVREIHSRKPQSYRTRVSDEFRKSKGLILVTSDVSARGVDYPDVTLVVQVGLPADKQQYIHRLGRTGRKGKEGQGILLLAPWEEFFLATAKDLPIVKAPVPLVDPDTKKKVERALSNVEMKNKEAAYQAWLGYYNSNKKVGKDKYRLVELANEFSRCMGLDNPPAIPKLVLGKMGLKNVPGLRSK* 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr8g0815 668 CDD SF2_C_DEAD 429 562 - -
Mtr8g0815 668 Pfam DEAD/DEAH box helicase 225 402 IPR011545 GO:0003676|GO:0005524
Mtr8g0815 668 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 25 162 666 - -
Mtr8g0815 668 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 25 28 72 - -
Mtr8g0815 668 Gene3D - 424 646 IPR027417 -
Mtr8g0815 668 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 200 228 IPR014014 GO:0003724
Mtr8g0815 668 Gene3D - 166 415 IPR027417 -
Mtr8g0815 668 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 231 414 IPR014001 -
Mtr8g0815 668 Pfam Helicase conserved C-terminal domain 448 553 IPR001650 -
Mtr8g0815 668 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 449 609 IPR001650 -
Mtr8g0815 668 PANTHER RNA HELICASE 28 72 - -
Mtr8g0815 668 PANTHER RNA HELICASE 162 666 - -
Mtr8g0815 668 MobiDBLite consensus disorder prediction 147 163 - -
Mtr8g0815 668 MobiDBLite consensus disorder prediction 80 163 - -
Mtr8g0815 668 SMART helicmild6 472 553 IPR001650 -
Mtr8g0815 668 MobiDBLite consensus disorder prediction 89 112 - -
Mtr8g0815 668 SMART ultradead3 219 432 IPR014001 -
Mtr8g0815 668 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 277 568 IPR027417 -
Mtr8g0815 668 CDD DEADc_MSS116 207 416 - -
Mtr8g0815 668 MobiDBLite consensus disorder prediction 119 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr8g0815 Mtr-Chr8 10135165 10141179 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr8g0815 200 578 Eukaryotic Initiation Factors Gene Family AT3G19760 27.320 1.67e-43 159
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr8g0815 - - gmx:100795739 939.102